Variant report

Variant	rs16960663
Chromosome Location	chr16:12877538-12877539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4781325	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs4781326	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs4781335	1.00[CEU][hapmap]
rs8049496	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051242	chr16:12482972-12897243	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv542749	chr16:12482972-12897243	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1051607	chr16:12522130-13347676	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv542750	chr16:12522130-13347676	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv869284	chr16:12735729-13533462	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1052802	chr16:12766360-12964248	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1036493	chr16:12817416-12881078	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv2751547	chr16:12817920-12882336	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	esv2751548	chr16:12817920-12892036	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	nsv1052892	chr16:12824219-12881078	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
11	nsv525286	chr16:12826785-12878592	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
12	nsv571480	chr16:12826785-12878592	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
13	nsv571481	chr16:12826785-12880446	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
14	esv2751549	chr16:12829006-12880446	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12852200-12896600	Weak transcription	Right Ventricle	heart
2	chr16:12852400-12896600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr16:12852600-12877600	Weak transcription	HSMMtube	muscle
4	chr16:12855000-12881800	Weak transcription	Pancreas	Pancrea
5	chr16:12857200-12881800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr16:12860000-12879400	Weak transcription	Fetal Heart	heart
7	chr16:12861800-12883400	Weak transcription	Colonic Mucosa	Colon
8	chr16:12862200-12878000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr16:12862200-12878800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr16:12865400-12877800	Weak transcription	Colon Smooth Muscle	Colon
11	chr16:12865600-12881800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr16:12865600-12892400	Weak transcription	Osteobl	bone
13	chr16:12867400-12877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr16:12867400-12877600	Weak transcription	Fetal Muscle Leg	muscle
15	chr16:12867800-12878000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr16:12867800-12886600	Weak transcription	K562	blood
17	chr16:12868400-12888000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr16:12869600-12881600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr16:12869800-12881600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:12870200-12877800	Weak transcription	Primary B cells from cord blood	blood
21	chr16:12870400-12878200	Weak transcription	Thymus	Thymus
22	chr16:12871600-12877600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr16:12872800-12886800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr16:12874000-12882000	Weak transcription	A549	lung
25	chr16:12874600-12877600	Weak transcription	Aorta	Aorta
26	chr16:12874600-12881800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr16:12874800-12877600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr16:12874800-12877600	Weak transcription	Lung	lung
29	chr16:12874800-12886800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr16:12874800-12886800	Weak transcription	Esophagus	oesophagus
31	chr16:12875000-12877800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr16:12875000-12877800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr16:12875000-12878000	Strong transcription	HepG2	liver
34	chr16:12875000-12881400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr16:12875000-12888400	Weak transcription	Brain Hippocampus Middle	brain
36	chr16:12875000-12888600	Weak transcription	Brain Substantia Nigra	brain
37	chr16:12875200-12877600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr16:12875200-12877600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr16:12875200-12877600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr16:12875200-12877600	Weak transcription	Adipose Nuclei	Adipose
41	chr16:12875200-12877600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr16:12875200-12877600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr16:12875200-12877600	Weak transcription	Left Ventricle	heart
44	chr16:12875200-12877600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr16:12875200-12877600	Weak transcription	Dnd41	blood
46	chr16:12875200-12877800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr16:12875200-12877800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr16:12875200-12877800	Weak transcription	Liver	Liver
49	chr16:12875200-12877800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr16:12875200-12877800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links