The 2.0 version of rSNPBase

Variant report

Variant rs16962691
Chromosome Location chr18:29691115-29691116
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29673400-29692800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr18:29673400-29713800 Weak transcription Spleen Spleen
3 chr18:29673800-29702000 Weak transcription Pancreas Pancrea
4 chr18:29673800-29714000 Weak transcription Esophagus oesophagus
5 chr18:29673800-29714200 Weak transcription Ovary ovary
6 chr18:29673800-29715200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr18:29673800-29715200 Weak transcription Lung lung
8 chr18:29673800-29715800 Weak transcription Colonic Mucosa Colon
9 chr18:29673800-29717000 Weak transcription HSMMtube muscle
10 chr18:29674000-29692600 Weak transcription Placenta Placenta
11 chr18:29674000-29712000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr18:29674200-29692800 Weak transcription HSMM muscle
13 chr18:29674200-29693000 Weak transcription Fetal Muscle Trunk muscle
14 chr18:29674600-29695600 Weak transcription Rectal Smooth Muscle rectum
15 chr18:29674600-29703000 Weak transcription Osteobl bone
16 chr18:29674600-29705600 Weak transcription NHLF lung
17 chr18:29675000-29692200 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr18:29675000-29694600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr18:29675000-29717200 Weak transcription NH-A brain
20 chr18:29675200-29692800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr18:29675400-29693200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr18:29675400-29693200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr18:29675600-29691800 Weak transcription H1 Cell Line embryonic stem cell
24 chr18:29675800-29692000 Weak transcription HMEC breast
25 chr18:29676000-29693000 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr18:29676200-29692000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr18:29676200-29697200 Weak transcription NHDF-Ad bronchial
28 chr18:29676400-29691800 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr18:29676400-29692200 Weak transcription Duodenum Mucosa Duodenum
30 chr18:29676400-29693200 Weak transcription Fetal Lung lung
31 chr18:29676400-29707000 Weak transcription Brain Angular Gyrus brain
32 chr18:29676600-29692200 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr18:29676600-29692200 Weak transcription NHEK skin
34 chr18:29676600-29704800 Weak transcription Brain Inferior Temporal Lobe brain
35 chr18:29676800-29691800 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr18:29676800-29697400 Weak transcription Muscle Satellite Cultured Cells --
37 chr18:29676800-29704600 Weak transcription Fetal Brain Female brain
38 chr18:29676800-29705000 Weak transcription Brain Hippocampus Middle brain
39 chr18:29676800-29717200 Weak transcription Brain Germinal Matrix brain
40 chr18:29677000-29691800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr18:29677000-29692200 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr18:29677000-29692200 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr18:29677000-29696800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr18:29677000-29713800 Weak transcription Small Intestine intestine
45 chr18:29677000-29715600 Weak transcription Fetal Heart heart
46 chr18:29677000-29717000 Weak transcription Aorta Aorta
47 chr18:29677200-29692400 Weak transcription Left Ventricle heart
48 chr18:29677400-29694600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr18:29677800-29692200 Weak transcription Fetal Brain Male brain
50 chr18:29678200-29692400 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015