Variant report

Variant	rs16963220
Chromosome Location	chr15:50303892-50303893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16963207	0.98[ASN][1000 genomes]
rs16963226	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16963251	0.96[ASN][1000 genomes]
rs2899446	0.99[ASN][1000 genomes]
rs35609972	0.97[ASN][1000 genomes]
rs4580097	0.97[ASN][1000 genomes]
rs61142712	0.98[ASN][1000 genomes]
rs61695389	0.97[ASN][1000 genomes]
rs7180182	0.97[ASN][1000 genomes]
rs7180669	0.94[ASN][1000 genomes]
rs72734856	0.98[ASN][1000 genomes]
rs72734857	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72734860	0.96[ASN][1000 genomes]
rs72734861	0.97[ASN][1000 genomes]
rs8033655	0.98[ASN][1000 genomes]
rs935196	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904207	chr15:50290295-50352945	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1530	chr15:50302524-50347616	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50296200-50314200	Strong transcription	Primary hematopoietic stem cells	blood
2	chr15:50296400-50309200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr15:50296400-50311200	Weak transcription	Placenta	Placenta
4	chr15:50296400-50314600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:50296600-50304200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:50296800-50335200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:50297400-50334600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:50298800-50306400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:50298800-50306800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:50299400-50308800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:50302200-50314000	Weak transcription	Liver	Liver
12	chr15:50303200-50304400	Enhancers	Rectal Smooth Muscle	rectum
13	chr15:50303400-50304000	Enhancers	Colon Smooth Muscle	Colon
14	chr15:50303600-50304600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:50303800-50304200	Enhancers	Duodenum Smooth Muscle	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links