Variant report

Variant	rs16963400
Chromosome Location	chr15:50472760-50472761
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr15:50472439-50472916	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50471330..50473823-chr15:50485540..50487357,2	MCF-7	breast:
2	chr15:50471486..50473265-chr15:50550532..50553031,2	K562	blood:
3	chr15:50471286..50473926-chr15:50475708..50479311,4	K562	blood:
4	chr15:50471646..50476620-chr15:50646050..50650091,9	MCF-7	breast:
5	chr15:50471230..50474206-chr15:50522670..50525159,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1124609	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11635737	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1365506	0.83[ASN][1000 genomes]
rs1529341	1.00[JPT][hapmap]
rs1529343	1.00[JPT][hapmap]
rs16963439	1.00[JPT][hapmap]
rs16963459	0.82[JPT][hapmap]
rs2414034	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34146758	1.00[YRI][hapmap]
rs3784291	0.91[ASN][1000 genomes]
rs73395108	0.89[ASN][1000 genomes]
rs73409113	0.91[ASN][1000 genomes]
rs8024292	1.00[JPT][hapmap]
rs8043431	1.00[JPT][hapmap]
rs9920490	1.00[JPT][hapmap]
rs9920511	1.00[JPT][hapmap]
rs9920559	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904209	chr15:50444824-50482133	Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50472400-50473400	Enhancers	Hela-S3	cervix
2	chr15:50472600-50472800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr15:50472600-50473600	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links