Variant report

Variant	rs16966124
Chromosome Location	chr17:38852479-38852480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12943070	1.00[MEX][hapmap]
rs12943966	1.00[AMR][1000 genomes]
rs12946795	1.00[AMR][1000 genomes]
rs12947305	1.00[MEX][hapmap]
rs12948594	0.89[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16966138	1.00[ASW][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35292535	1.00[AMR][1000 genomes]
rs35674747	1.00[AMR][1000 genomes]
rs9895118	1.00[MEX][hapmap]
rs9908325	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv908225	chr17:38776406-38868480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38850000-38854000	Enhancers	Placenta	Placenta
2	chr17:38850800-38853200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr17:38851000-38854000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:38851600-38853000	Enhancers	Pancreas	Pancrea
5	chr17:38852000-38854600	Enhancers	Fetal Kidney	kidney
6	chr17:38852200-38852600	Flanking Active TSS	HepG2	liver
7	chr17:38852200-38853200	Enhancers	Fetal Intestine Large	intestine
8	chr17:38852200-38853200	Enhancers	Fetal Intestine Small	intestine
9	chr17:38852200-38853200	Enhancers	Gastric	stomach
10	chr17:38852200-38853200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr17:38852200-38853200	Flanking Active TSS	A549	lung
12	chr17:38852200-38854000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr17:38852200-38854000	Enhancers	Fetal Lung	lung
14	chr17:38852400-38853200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr17:38852400-38853400	Flanking Active TSS	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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