Variant report

Variant	rs16966775
Chromosome Location	chr15:75430976-75430977
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75430731..75432891-chr15:75456750..75458802,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12899456	0.81[AMR][1000 genomes]
rs12908919	0.89[CEU][hapmap];0.84[TSI][hapmap]
rs2304900	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs34073905	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35396991	0.81[AMR][1000 genomes]
rs71401673	0.81[AMR][1000 genomes]
rs71401683	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7177045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	nsv525506	chr15:75430526-75431795	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75412800-75433600	Weak transcription	Aorta	Aorta
2	chr15:75423400-75431600	Weak transcription	Lung	lung
3	chr15:75427800-75431800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:75428000-75431200	Enhancers	HepG2	liver
5	chr15:75428800-75432600	Weak transcription	Right Atrium	heart
6	chr15:75429000-75431400	Enhancers	GM12878-XiMat	blood
7	chr15:75429400-75431600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:75429800-75431800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:75430000-75431600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:75430200-75431400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr15:75430200-75431400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:75430200-75431600	Enhancers	Fetal Muscle Leg	muscle
13	chr15:75430200-75431800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:75430200-75431800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr15:75430200-75432000	Enhancers	Placenta	Placenta
16	chr15:75430200-75433000	Enhancers	Ovary	ovary
17	chr15:75430400-75431200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr15:75430400-75431600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr15:75430400-75431600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:75430400-75431600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:75430400-75431600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:75430400-75431600	Enhancers	Fetal Muscle Trunk	muscle
23	chr15:75430400-75431800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:75430400-75431800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr15:75430400-75433200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:75430600-75431000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr15:75430600-75431000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:75430600-75431000	Enhancers	Fetal Thymus	thymus
29	chr15:75430600-75431000	Enhancers	HSMMtube	muscle
30	chr15:75430600-75431000	Enhancers	Osteobl	bone
31	chr15:75430600-75431200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:75430600-75431200	Enhancers	NH-A	brain
33	chr15:75430600-75431400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:75430600-75431400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:75430600-75431400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:75430600-75431600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr15:75430600-75431600	Enhancers	HMEC	breast
38	chr15:75430600-75431800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:75430600-75432000	Enhancers	Spleen	Spleen
40	chr15:75430600-75433600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr15:75430800-75431200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:75430800-75431200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr15:75430800-75431200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:75430800-75431200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:75430800-75431200	Flanking Active TSS	NHDF-Ad	bronchial
46	chr15:75430800-75431600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:75430800-75431600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:75430800-75431600	Enhancers	Primary hematopoietic stem cells	blood
49	chr15:75430800-75431600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:75430800-75431600	Enhancers	Adipose Nuclei	Adipose

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