Variant report

Variant	rs16966780
Chromosome Location	chr15:75465468-75465469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75452201..75453909-chr15:75463652..75466558,2	K562	blood:
2	chr15:75463144..75468102-chr15:75468873..75472339,5	K562	blood:
3	chr15:75463751..75466296-chr15:75471141..75473293,2	K562	blood:
4	chr15:75446676..75449374-chr15:75464982..75466501,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11638544	0.85[CEU][hapmap]
rs12592387	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1873380	0.82[CEU][hapmap];0.91[AMR][1000 genomes]
rs56052948	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75454200-75470000	Weak transcription	Thymus	Thymus
2	chr15:75461200-75465600	Enhancers	HSMMtube	muscle
3	chr15:75462000-75465600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:75462000-75466200	Enhancers	HMEC	breast
5	chr15:75462400-75466200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:75462600-75465600	Enhancers	HSMM	muscle
7	chr15:75462600-75469000	Enhancers	Hela-S3	cervix
8	chr15:75462800-75465600	Enhancers	Primary hematopoietic stem cells	blood
9	chr15:75462800-75465600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:75463000-75465600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:75463000-75470600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr15:75463200-75470000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr15:75463400-75469000	Weak transcription	Gastric	stomach
14	chr15:75463600-75469800	Weak transcription	Small Intestine	intestine
15	chr15:75463600-75471000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:75463800-75466400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:75463800-75466400	Weak transcription	Right Ventricle	heart
18	chr15:75464000-75467800	Weak transcription	NHDF-Ad	bronchial
19	chr15:75464000-75468800	Weak transcription	Pancreas	Pancrea
20	chr15:75464000-75470200	Weak transcription	Left Ventricle	heart
21	chr15:75464200-75467600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:75464200-75467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:75464200-75467800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr15:75464200-75468800	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:75464400-75467800	Weak transcription	Osteobl	bone
26	chr15:75464400-75470400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:75464400-75470600	Weak transcription	HUVEC	blood vessel
28	chr15:75464800-75467800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:75464800-75469000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:75464800-75469200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:75464800-75469800	Weak transcription	NHLF	lung
32	chr15:75464800-75470000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:75464800-75470400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:75465000-75465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:75465000-75466400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:75465000-75466600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:75465000-75467800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:75465000-75468000	Weak transcription	K562	blood
39	chr15:75465000-75468600	Weak transcription	Lung	lung
40	chr15:75465000-75468600	Weak transcription	Right Atrium	heart
41	chr15:75465000-75468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:75465000-75469000	Weak transcription	Spleen	Spleen
43	chr15:75465000-75469400	Weak transcription	Fetal Thymus	thymus
44	chr15:75465000-75469800	Weak transcription	Fetal Heart	heart
45	chr15:75465200-75466400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:75465200-75467800	Weak transcription	NH-A	brain
47	chr15:75465400-75465800	Weak transcription	HepG2	liver
48	chr15:75465400-75466200	Enhancers	NHEK	skin
49	chr15:75465400-75467800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr15:75465400-75468000	Weak transcription	GM12878-XiMat	blood

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