Variant report

Variant	rs16967146
Chromosome Location	chr15:38944630-38944631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:38939187..38942052-chr15:38942295..38944977,3	MCF-7	breast:
2	chr15:38885478..38887705-chr15:38942615..38945016,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11073335	1.00[CEU][hapmap]
rs28477135	0.84[EUR][1000 genomes]
rs28527790	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8035966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036852	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38942600-38944800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:38942600-38946000	Enhancers	Primary hematopoietic stem cells	blood
3	chr15:38942600-38946000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:38942800-38945200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr15:38943000-38945200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr15:38943000-38945200	Flanking Active TSS	Dnd41	blood
7	chr15:38943000-38945400	Enhancers	Duodenum Mucosa	Duodenum
8	chr15:38943000-38945600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr15:38943000-38945800	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr15:38943000-38946200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr15:38943200-38944800	Enhancers	NHEK	skin
12	chr15:38943200-38945200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr15:38943200-38945200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:38943200-38945200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr15:38943200-38945200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr15:38943400-38944800	Enhancers	Spleen	Spleen
17	chr15:38943400-38945200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:38943400-38945200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:38943400-38946000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr15:38943600-38944800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:38943600-38945600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:38944000-38945600	Enhancers	GM12878-XiMat	blood
23	chr15:38944200-38944800	Enhancers	Esophagus	oesophagus
24	chr15:38944200-38945400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:38944200-38945600	Flanking Active TSS	Fetal Thymus	thymus
26	chr15:38944400-38945200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:38944400-38945400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:38944400-38946200	Enhancers	Primary B cells from cord blood	blood
29	chr15:38944400-38946400	Enhancers	Primary B cells from peripheral blood	blood
30	chr15:38944400-38947600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:38944400-38949200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:38944600-38944800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr15:38944600-38945000	Enhancers	Thymus	Thymus

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