Variant report

Variant	rs16969081
Chromosome Location	chr15:39760600-39760601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:39760544-39760942	HL-60	blood:	n/a	chr15:39760702-39760715
2	FOS	chr15:39760591-39760968	HUVEC	blood vessel:	n/a	chr15:39760769-39760780 chr15:39760771-39760779
3	GATA2	chr15:39760555-39760894	HUVEC	blood vessel:	n/a	chr15:39760772-39760781
4	SPI1	chr15:39760440-39760969	HL-60	blood:	n/a	chr15:39760702-39760715
5	CUX1	chr15:39760573-39760719	K562	blood:	n/a	n/a
6	POLR2A	chr15:39760596-39760811	HUVEC	blood vessel:	n/a	n/a
7	BHLHE40	chr15:39760565-39760736	K562	blood:	n/a	n/a
8	ATF1	chr15:39760586-39760845	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000259269	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16969293	1.00[AMR][1000 genomes]
rs41366349	1.00[AMR][1000 genomes]
rs4419036	1.00[AMR][1000 genomes]
rs61731228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39753600-39765200	Weak transcription	Pancreas	Pancrea
2	chr15:39754600-39764600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:39754800-39763400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:39757400-39761200	Enhancers	Fetal Stomach	stomach
5	chr15:39757600-39761200	Enhancers	Fetal Muscle Leg	muscle
6	chr15:39758000-39762200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:39758200-39765200	Weak transcription	Right Atrium	heart
8	chr15:39758600-39760800	Weak transcription	Osteobl	bone
9	chr15:39758800-39764000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:39758800-39765200	Weak transcription	HSMM	muscle
11	chr15:39759400-39761800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr15:39759600-39760800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:39759600-39763800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:39759800-39760600	Weak transcription	Adipose Nuclei	Adipose
15	chr15:39759800-39760800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:39759800-39761800	Enhancers	Primary hematopoietic stem cells	blood
17	chr15:39759800-39761800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:39759800-39763000	Weak transcription	Fetal Lung	lung
19	chr15:39759800-39763400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:39759800-39764000	Weak transcription	NHLF	lung
21	chr15:39759800-39765200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:39759800-39766800	Weak transcription	Lung	lung
23	chr15:39759800-39770800	Weak transcription	Stomach Mucosa	stomach
24	chr15:39760000-39760600	Weak transcription	NHDF-Ad	bronchial
25	chr15:39760000-39761000	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:39760000-39761400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr15:39760000-39764600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:39760200-39761400	Enhancers	HUVEC	blood vessel
29	chr15:39760200-39762000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr15:39760400-39761200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr15:39760400-39761200	Enhancers	K562	blood
32	chr15:39760400-39761400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:39760400-39761600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:39760600-39761200	Enhancers	Adipose Nuclei	Adipose
35	chr15:39760600-39761200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links