Variant report

Variant	rs16969255
Chromosome Location	chr15:39847360-39847361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39845301..39848272-chr15:39850823..39852507,2	MCF-7	breast:
2	chr15:39826333..39829143-chr15:39844610..39847564,2	MCF-7	breast:
3	chr15:39841161..39843886-chr15:39846091..39848223,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10152921	1.00[AMR][1000 genomes]
rs10520136	0.86[ASN][1000 genomes]
rs12324682	0.86[ASN][1000 genomes]
rs16969248	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969335	0.86[ASN][1000 genomes]
rs16969338	0.86[ASN][1000 genomes]
rs16969352	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39839000-39848200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:39844400-39851200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:39844600-39849600	Enhancers	Colon Smooth Muscle	Colon
4	chr15:39844800-39848600	Enhancers	Ovary	ovary
5	chr15:39844800-39849000	Enhancers	Fetal Lung	lung
6	chr15:39845200-39848200	Enhancers	Rectal Smooth Muscle	rectum
7	chr15:39845600-39847600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr15:39845800-39849800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:39846200-39848400	Enhancers	Fetal Stomach	stomach
10	chr15:39846400-39847400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:39846400-39848200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:39846600-39849600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:39846600-39849600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:39846800-39848000	Weak transcription	Fetal Heart	heart
15	chr15:39846800-39848600	Enhancers	GM12878-XiMat	blood
16	chr15:39846800-39850800	Weak transcription	Pancreas	Pancrea
17	chr15:39847000-39847600	Weak transcription	NH-A	brain
18	chr15:39847000-39847800	Weak transcription	Fetal Thymus	thymus
19	chr15:39847000-39847800	Weak transcription	Left Ventricle	heart
20	chr15:39847000-39848000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:39847000-39848200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:39847000-39850200	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:39847200-39848800	Weak transcription	HSMM	muscle

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