Variant report

Variant	rs16970709
Chromosome Location	chr15:40738839-40738840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40736651..40738886-chr15:40760869..40764082,3	K562	blood:
2	chr15:40738741..40740672-chr15:40798310..40800042,2	K562	blood:
3	chr15:40729975..40738939-chr15:40745780..40750666,13	K562	blood:
4	chr15:40736125..40739394-chr15:40747307..40751938,5	K562	blood:
5	chr15:40731638..40735002-chr15:40738722..40741318,4	MCF-7	breast:
6	chr15:40738374..40740268-chr15:40744165..40746234,2	MCF-7	breast:
7	chr15:40737690..40739438-chr15:40747846..40750336,2	MCF-7	breast:
8	chr15:40731621..40739951-chr15:40753297..40765462,23	K562	blood:
9	chr15:40702559..40704210-chr15:40737836..40739478,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169105	Chromatin interaction
ENSG00000259364	Chromatin interaction
ENSG00000128928	Chromatin interaction
ENSG00000259211	Chromatin interaction
ENSG00000140320	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12905240	1.00[JPT][hapmap]
rs16970758	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17671250	1.00[JPT][hapmap]
rs17672041	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17733008	1.00[JPT][hapmap]
rs2053973	1.00[JPT][hapmap]
rs57149276	1.00[EUR][1000 genomes]
rs57812947	0.93[ASN][1000 genomes]
rs679882	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7164132	1.00[JPT][hapmap]
rs7164321	1.00[JPT][hapmap]
rs7166991	1.00[JPT][hapmap]
rs7169262	1.00[JPT][hapmap]
rs7169404	1.00[JPT][hapmap]
rs8026523	1.00[JPT][hapmap]
rs8033938	1.00[JPT][hapmap]
rs8042419	0.83[AMR][1000 genomes]
rs8042758	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40734800-40741200	Weak transcription	NHDF-Ad	bronchial
2	chr15:40734800-40746400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:40734800-40747000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:40734800-40751000	Weak transcription	Aorta	Aorta
5	chr15:40735000-40744000	Weak transcription	Primary B cells from cord blood	blood
6	chr15:40735000-40746600	Weak transcription	HSMM	muscle
7	chr15:40735200-40747800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:40735400-40742400	Weak transcription	Psoas Muscle	Psoas
9	chr15:40735600-40739400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:40735600-40743400	Weak transcription	Brain Substantia Nigra	brain
11	chr15:40735800-40739400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr15:40735800-40742200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:40735800-40743400	Weak transcription	Fetal Thymus	thymus
14	chr15:40735800-40744400	Weak transcription	Hela-S3	cervix
15	chr15:40736000-40742200	Weak transcription	Thymus	Thymus
16	chr15:40736200-40742600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:40736200-40742600	Weak transcription	Dnd41	blood
18	chr15:40736200-40742800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:40736200-40742800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:40736200-40743600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr15:40736200-40743800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:40736400-40739200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr15:40736400-40742400	Weak transcription	Liver	Liver
24	chr15:40736800-40740600	Weak transcription	HepG2	liver
25	chr15:40736800-40741400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:40736800-40743400	Weak transcription	Primary T cells from cord blood	blood
27	chr15:40736800-40748600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:40737000-40742000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:40737000-40743400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:40737000-40744400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr15:40737200-40741000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:40738000-40741400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:40738000-40741400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:40738000-40742400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:40738000-40743600	Weak transcription	Stomach Mucosa	stomach
36	chr15:40738000-40750400	Weak transcription	Brain Germinal Matrix	brain
37	chr15:40738200-40739000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr15:40738200-40739200	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr15:40738200-40740600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:40738200-40741400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:40738200-40741400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:40738200-40741400	Weak transcription	Osteobl	bone
43	chr15:40738200-40742200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr15:40738200-40742200	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:40738200-40743400	Weak transcription	Brain Anterior Caudate	brain
46	chr15:40738200-40743800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr15:40738200-40746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:40738200-40746800	Weak transcription	Adipose Nuclei	Adipose
49	chr15:40738200-40747000	Weak transcription	Fetal Muscle Leg	muscle
50	chr15:40738200-40751000	Weak transcription	Rectal Smooth Muscle	rectum

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