Variant report

Variant	rs16971026
Chromosome Location	chr17:33825496-33825497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12945319	1.00[MEX][hapmap]
rs35945309	1.00[MEX][hapmap]
rs7210207	1.00[MEX][hapmap]
rs722375	1.00[MEX][hapmap]
rs9303686	1.00[MEX][hapmap]
rs9303687	1.00[MEX][hapmap]
rs9910287	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33815800-33826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr17:33816000-33826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:33822200-33826600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:33823000-33826200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:33823000-33830400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr17:33823400-33825600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr17:33823400-33828200	Genic enhancers	Primary T cells fromperipheralblood	blood
8	chr17:33823400-33835600	Weak transcription	GM12878-XiMat	blood
9	chr17:33823800-33828600	Weak transcription	Pancreas	Pancrea
10	chr17:33824200-33825600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:33824200-33826000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:33824200-33827200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr17:33824200-33834800	Weak transcription	Spleen	Spleen
14	chr17:33824400-33827600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr17:33824600-33825800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr17:33824800-33825600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr17:33824800-33825600	Active TSS	Right Atrium	heart
18	chr17:33824800-33825600	Bivalent Enhancer	HUVEC	blood vessel
19	chr17:33824800-33826200	Bivalent Enhancer	Fetal Thymus	thymus
20	chr17:33824800-33826800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr17:33824800-33829000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr17:33825000-33825600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr17:33825000-33825600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr17:33825000-33825600	Bivalent Enhancer	Brain Hippocampus Middle	brain
25	chr17:33825000-33825600	Bivalent Enhancer	Right Ventricle	heart
26	chr17:33825000-33825800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
27	chr17:33825000-33826200	Bivalent Enhancer	Fetal Stomach	stomach
28	chr17:33825000-33828800	Strong transcription	Dnd41	blood
29	chr17:33825200-33825600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
30	chr17:33825200-33825600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr17:33825200-33825600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
32	chr17:33825200-33825600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
33	chr17:33825200-33825600	Bivalent/Poised TSS	Fetal Brain Male	brain
34	chr17:33825200-33825800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
35	chr17:33825200-33825800	Flanking Bivalent TSS/Enh	Fetal Lung	lung
36	chr17:33825200-33826000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
37	chr17:33825400-33825600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
38	chr17:33825400-33825600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
39	chr17:33825400-33825600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr17:33825400-33825600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
41	chr17:33825400-33825600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
42	chr17:33825400-33825600	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
43	chr17:33825400-33825600	Bivalent Enhancer	Brain Germinal Matrix	brain
44	chr17:33825400-33825600	Bivalent Enhancer	Fetal Muscle Leg	muscle
45	chr17:33825400-33825600	Bivalent/Poised TSS	Left Ventricle	heart
46	chr17:33825400-33825600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
47	chr17:33825400-33825800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr17:33825400-33825800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr17:33825400-33826000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
50	chr17:33825400-33826000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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