Variant report

Variant	rs16971183
Chromosome Location	chr15:41188337-41188338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41186714..41189408-chr15:41192146..41195371,4	MCF-7	breast:
2	chr15:41045121..41047501-chr15:41186359..41188842,2	K562	blood:
3	chr15:41044630..41047663-chr15:41185217..41189065,4	K562	blood:
4	chr15:41147027..41152625-chr15:41184304..41188925,8	K562	blood:
5	chr15:41188067..41190657-chr15:41190736..41192899,3	K562	blood:
6	chr15:41187545..41189858-chr15:41220285..41222026,2	K562	blood:
7	chr15:41135697..41137573-chr15:41186789..41189457,2	MCF-7	breast:
8	chr15:41135103..41140677-chr15:41182913..41189081,12	MCF-7	breast:
9	chr15:40990437..40992433-chr15:41186523..41189273,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000051180	Chromatin interaction
ENSG00000128917	Chromatin interaction
ENSG00000261183	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000137824	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12102209	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
7	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
9	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv819345	chr15:41188313-41191222	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41187000-41188400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr15:41187600-41188600	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr15:41187600-41191200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41187600-41191200	Weak transcription	Aorta	Aorta
5	chr15:41187600-41194400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:41187800-41188400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:41187800-41188400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:41187800-41188400	Genic enhancers	Primary T cells from cord blood	blood
9	chr15:41187800-41188400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:41187800-41188400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr15:41187800-41188400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr15:41187800-41188400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:41187800-41188400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr15:41187800-41188400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:41187800-41188400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:41187800-41188400	Genic enhancers	Colon Smooth Muscle	Colon
17	chr15:41187800-41188400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:41187800-41188400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr15:41187800-41188600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:41187800-41188600	Genic enhancers	Right Ventricle	heart
21	chr15:41187800-41188600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:41187800-41195400	Weak transcription	Fetal Kidney	kidney
23	chr15:41188000-41188400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:41188000-41188400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:41188000-41188400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:41188000-41188400	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:41188000-41188400	Genic enhancers	Primary hematopoietic stem cells	blood
28	chr15:41188000-41188400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
29	chr15:41188000-41188400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:41188000-41188400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr15:41188000-41188400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:41188000-41188400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
33	chr15:41188000-41188400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:41188000-41188400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:41188000-41188400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:41188000-41188400	Genic enhancers	Adipose Nuclei	Adipose
37	chr15:41188000-41188400	Enhancers	Liver	Liver
38	chr15:41188000-41188400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
39	chr15:41188000-41188400	Enhancers	Fetal Heart	heart
40	chr15:41188000-41188400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
41	chr15:41188000-41188400	Genic enhancers	Fetal Muscle Trunk	muscle
42	chr15:41188000-41188400	Genic enhancers	Fetal Stomach	stomach
43	chr15:41188000-41188400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr15:41188000-41188400	Transcr. at gene 5' and 3'	Dnd41	blood
45	chr15:41188000-41188400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
46	chr15:41188000-41188400	Genic enhancers	K562	blood
47	chr15:41188000-41188600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
48	chr15:41188000-41188600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:41188000-41188600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:41188000-41188600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links