Variant report

Variant	rs16972292
Chromosome Location	chr16:71446856-71446857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71446084..71447364-chr16:71575875..71576763,3	MCF-7	breast:
2	chr16:71400881..71402032-chr16:71446303..71446913,3	MCF-7	breast:
3	chr16:71446373..71446879-chr16:71455612..71456584,2	K562	blood:
4	chr16:71446209..71447138-chr16:71532022..71532697,2	MCF-7	breast:
5	chr16:71446287..71447211-chr16:71464034..71464697,2	K562	blood:
6	chr16:71446366..71447179-chr16:71644599..71645567,3	K562	blood:
7	chr16:71445815..71447496-chr16:71533388..71534585,10	MCF-7	breast:
8	chr16:71446743..71447305-chr16:71474312..71475050,2	MCF-7	breast:
9	chr16:71446276..71447832-chr16:71533331..71534425,15	K562	blood:
10	chr16:71446456..71447218-chr16:71495594..71496221,2	MCF-7	breast:
11	chr16:71406491..71407495-chr16:71445952..71447231,3	MCF-7	breast:
12	chr16:71033153..71034346-chr16:71445929..71447230,11	MCF-7	breast:
13	chr16:71445857..71447501-chr16:71527654..71528626,7	MCF-7	breast:
14	chr16:71446374..71447244-chr16:71571321..71571858,3	K562	blood:
15	chr16:71400999..71401956-chr16:71445867..71446859,3	K562	blood:
16	chr16:71446668..71447388-chr16:71644674..71645331,3	MCF-7	breast:
17	chr16:71446325..71447209-chr16:71455576..71456210,4	MCF-7	breast:
18	chr16:71446140..71447237-chr16:71533352..71534345,5	MCF-7	breast:
19	chr16:71446400..71447280-chr20:56176743..56177607,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167377	Chromatin interaction
ENSG00000247324	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12102284	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13331092	0.81[LWK][hapmap];0.81[MKK][hapmap]
rs16973227	0.94[LWK][hapmap];0.81[MKK][hapmap]
rs17344216	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs62056183	0.86[EUR][1000 genomes]
rs8063328	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71446200-71447000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
2	chr16:71446200-71447000	Bivalent Enhancer	HepG2	liver
3	chr16:71446200-71447200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
4	chr16:71446400-71447000	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr16:71446400-71447000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
6	chr16:71446400-71447000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
7	chr16:71446400-71447000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:71446400-71447000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr16:71446400-71447000	Bivalent Enhancer	Brain Hippocampus Middle	brain
10	chr16:71446400-71447200	Enhancers	Primary B cells from peripheral blood	blood
11	chr16:71446600-71447000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr16:71446600-71447000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr16:71446600-71447000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
14	chr16:71446800-71447000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:71446800-71447000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr16:71446800-71447000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr16:71446800-71447000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr16:71446800-71447000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr16:71446800-71447000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr16:71446800-71447200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr16:71446800-71447200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr16:71446800-71447200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr16:71446800-71447200	Enhancers	Fetal Brain Female	brain
24	chr16:71446800-71447600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr16:71446800-71459600	Weak transcription	Spleen	Spleen

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