Variant report

Variant	rs16973276
Chromosome Location	chr16:71548794-71548795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11864464	0.91[AFR][1000 genomes]
rs11866664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv906892	chr16:71526720-71570413	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71543400-71549800	Weak transcription	Pancreas	Pancrea
2	chr16:71545400-71548800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr16:71547800-71549000	Enhancers	Colonic Mucosa	Colon
4	chr16:71548000-71549000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr16:71548400-71548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr16:71548600-71549200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr16:71548600-71549200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr16:71548600-71549400	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links