Variant report

Variant	rs16973319
Chromosome Location	chr15:82333168-82333169
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:82333159-82333701	H1-neurons	neurons:	n/a	n/a
2	MXI1	chr15:82333159-82333524	H1-hESC	embryonic stem cell:	n/a	chr15:82333307-82333316
3	MAX	chr15:82333107-82333595	MCF-7	breast:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
4	KAP1	chr15:82332953-82333628	HEK293	kidney:	n/a	n/a
5	SIN3AK20	chr15:82332963-82333781	MCF-7	breast:	n/a	n/a
6	MAX	chr15:82333079-82333704	MCF-7	breast:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
7	BHLHE40	chr15:82333139-82333576	K562	blood:	n/a	n/a
8	USF1	chr15:82333159-82333386	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr15:82333114-82333479	NB4	blood:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
10	MAFK	chr15:82333103-82333540	K562	blood:	n/a	chr15:82333373-82333388
11	POLR2A	chr15:82332216-82334013	IMR90	lung:	n/a	n/a
12	POLR2A	chr15:82333129-82333402	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr15:82333129-82333220	Hela-S3	cervix:	n/a	n/a
14	USF1	chr15:82333100-82333471	H1-hESC	embryonic stem cell:	n/a	n/a
15	MAX	chr15:82333127-82333604	H1-hESC	embryonic stem cell:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
16	MYC	chr15:82333073-82333292	H1-hESC	embryonic stem cell:	n/a	n/a
17	USF1	chr15:82333118-82333411	K562	blood:	n/a	n/a
18	MAX	chr15:82333153-82333435	K562	blood:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
19	POLR2A	chr15:82332746-82333926	K562	blood:	n/a	n/a
20	MAX	chr15:82333116-82333542	H1-hESC	embryonic stem cell:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
21	MAX	chr15:82333160-82333604	K562	blood:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
22	ZNF263	chr15:82332929-82333682	HEK293-T-REx	kidney:	n/a	chr15:82333314-82333323
23	POLR2A	chr15:82332846-82333632	H1-neurons	neurons:	n/a	n/a
24	MAX	chr15:82333145-82333504	H1-hESC	embryonic stem cell:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
25	MYC	chr15:82333122-82333507	K562	blood:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315
26	MAX	chr15:82333101-82333554	K562	blood:	n/a	chr15:82333306-82333315 chr15:82333305-82333316 chr15:82333306-82333316 chr15:82333305-82333316 chr15:82333307-82333314 chr15:82333306-82333315

No.	Distal block	Cell Line	Cell type
1	chr15:82095888..82097859-chr15:82332803..82335499,2	K562	blood:
2	chr15:82325238..82327980-chr15:82332342..82333966,2	K562	blood:
3	chr15:82321898..82324305-chr15:82331852..82333474,2	MCF-7	breast:
4	chr15:82330594..82336594-chr15:82336813..82340577,9	K562	blood:
5	chr15:82332579..82335110-chr15:82342435..82344275,2	K562	blood:
6	chr15:82299760..82303058-chr15:82332264..82335755,3	K562	blood:
7	chr15:82328700..82330295-chr15:82332113..82333993,2	MCF-7	breast:
8	chr15:82328020..82329599-chr15:82331428..82334230,2	K562	blood:

Variant related genes	Relation type
ENSG00000222521	TF binding region
ENSG00000183496	Chromatin interaction
ENSG00000259622	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17269323	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82324000-82333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:82327400-82335000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:82327600-82334400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:82330400-82333800	Weak transcription	NH-A	brain
5	chr15:82331400-82333200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:82331400-82335200	Weak transcription	Thymus	Thymus
7	chr15:82331800-82333400	Enhancers	Ovary	ovary
8	chr15:82331800-82333600	Enhancers	Right Atrium	heart
9	chr15:82332000-82335400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:82332000-82335400	Weak transcription	Spleen	Spleen
11	chr15:82332200-82333600	Enhancers	Left Ventricle	heart
12	chr15:82332200-82333600	Enhancers	Psoas Muscle	Psoas
13	chr15:82332200-82333800	Enhancers	Fetal Muscle Leg	muscle
14	chr15:82332200-82333800	Weak transcription	HSMM	muscle
15	chr15:82332200-82334800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:82332200-82335600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:82332400-82333200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:82332400-82333600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr15:82332400-82333800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:82332400-82334000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:82332400-82335400	Weak transcription	HUVEC	blood vessel
22	chr15:82332600-82333200	Enhancers	Colon Smooth Muscle	Colon
23	chr15:82332600-82333200	Enhancers	K562	blood
24	chr15:82332600-82333400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr15:82332600-82333400	Enhancers	Fetal Heart	heart
26	chr15:82332600-82334200	Enhancers	Fetal Brain Male	brain
27	chr15:82332800-82333200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr15:82332800-82333200	Flanking Active TSS	Brain Germinal Matrix	brain
29	chr15:82332800-82333200	Enhancers	Fetal Lung	lung
30	chr15:82332800-82333400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr15:82332800-82333400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr15:82332800-82333400	Enhancers	Rectal Smooth Muscle	rectum
33	chr15:82332800-82333600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr15:82332800-82333600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:82332800-82333600	Enhancers	Primary hematopoietic stem cells	blood
36	chr15:82332800-82333600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:82332800-82333600	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
38	chr15:82332800-82333600	Enhancers	Pancreas	Pancrea
39	chr15:82332800-82335000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr15:82333000-82333200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:82333000-82333400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr15:82333000-82333400	Weak transcription	Fetal Thymus	thymus
43	chr15:82333000-82333600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr15:82333000-82333600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:82333000-82333600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr15:82333000-82333600	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr15:82333000-82333600	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr15:82333000-82333600	Genic enhancers	Fetal Stomach	stomach
49	chr15:82333000-82333600	Enhancers	Stomach Mucosa	stomach
50	chr15:82333000-82333600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links