Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10512521	1.00[CEU][hapmap]
rs10512525	1.00[CEU][hapmap]
rs16967340	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16973450	1.00[CEU][hapmap]
rs16973486	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16973521	1.00[CEU][hapmap]
rs2058128	1.00[CEU][hapmap]
rs58348599	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7216483	1.00[CEU][hapmap]
rs7221611	1.00[CEU][hapmap]
rs7223763	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs73365972	0.85[AFR][1000 genomes]
rs73365999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9889351	1.00[CEU][hapmap]
rs9889366	1.00[CEU][hapmap]
rs9890654	1.00[CEU][hapmap]
rs9892535	1.00[CEU][hapmap]
rs9896028	1.00[CEU][hapmap]
rs9899297	1.00[CEU][hapmap]
rs9900860	1.00[CEU][hapmap]
rs9904441	1.00[CEU][hapmap]
rs9914407	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66977400-66989400	Weak transcription	Pancreas	Pancrea
2	chr17:66977600-67001400	Weak transcription	Fetal Lung	lung
3	chr17:66977800-66991000	Weak transcription	Fetal Stomach	stomach
4	chr17:66977800-66991600	Strong transcription	Adipose Nuclei	Adipose
5	chr17:66977800-67027400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr17:66978600-66988000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:66978600-66989400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:66979400-67005400	Weak transcription	Psoas Muscle	Psoas
9	chr17:66979600-67001200	Weak transcription	Left Ventricle	heart
10	chr17:66980400-67009400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr17:66981400-67001200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr17:66981400-67001400	Weak transcription	Fetal Muscle Leg	muscle
13	chr17:66982600-66990000	Strong transcription	Liver	Liver
14	chr17:66983600-66988000	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr17:66985400-66988200	Strong transcription	Ovary	ovary
16	chr17:66985600-66988000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr17:66986800-66989000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr17:66987400-66989200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr17:66987800-66989400	Weak transcription	NHDF-Ad	bronchial

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