Variant report

Variant	rs16974720
Chromosome Location	chr15:54810532-54810533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17818554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483283	1.00[ASN][1000 genomes]
rs28537662	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539108	1.00[ASN][1000 genomes]
rs28570167	1.00[ASN][1000 genomes]
rs28593470	1.00[ASN][1000 genomes]
rs28690435	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28813404	1.00[ASN][1000 genomes]
rs28857471	1.00[ASN][1000 genomes]
rs57288300	1.00[ASN][1000 genomes]
rs8036177	1.00[ASN][1000 genomes]
rs884041	0.81[CEU][hapmap]
rs9920072	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920446	1.00[CEU][hapmap]
rs9920497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9920565	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16974720	RAB27A	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54807000-54820600	Weak transcription	Fetal Brain Male	brain
2	chr15:54809000-54814000	Weak transcription	Ovary	ovary
3	chr15:54809600-54811200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:54809600-54811200	Enhancers	Fetal Intestine Small	intestine
5	chr15:54809600-54811200	Enhancers	Fetal Kidney	kidney
6	chr15:54809600-54811800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:54809600-54814400	Enhancers	Fetal Lung	lung
8	chr15:54809800-54811600	Enhancers	Primary hematopoietic stem cells	blood
9	chr15:54809800-54811800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:54810200-54812000	Enhancers	Adipose Nuclei	Adipose
11	chr15:54810400-54810800	Enhancers	Rectal Smooth Muscle	rectum
12	chr15:54810400-54811000	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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