Variant report
| Variant | rs16974943 |
|---|---|
| Chromosome Location | chr18:39124656-39124657 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10460066 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10502766 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16974717 | 0.92[EUR][1000 genomes] |
| rs16974727 | 0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16974766 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16974770 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16974826 | 0.97[EUR][1000 genomes] |
| rs16974829 | 1.00[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16974841 | 0.97[EUR][1000 genomes] |
| rs1942084 | 0.82[ASN][1000 genomes] |
| rs2587621 | 0.83[ASN][1000 genomes] |
| rs2587624 | 0.91[ASN][1000 genomes] |
| rs2587626 | 0.91[ASN][1000 genomes] |
| rs2612328 | 0.91[ASN][1000 genomes] |
| rs2612331 | 0.91[ASN][1000 genomes] |
| rs2848776 | 0.91[ASN][1000 genomes] |
| rs2848777 | 0.91[ASN][1000 genomes] |
| rs3752060 | 0.83[ASN][1000 genomes] |
| rs56194832 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs59027916 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61697885 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72901928 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72901933 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72901949 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72901970 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9954166 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv909564 | chr18:38739067-39179256 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1066869 | chr18:38742896-39680723 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv543685 | chr18:38742896-39680723 | Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv2267 | chr18:39123940-39169583 | Enhancers Weak transcription Strong transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:39118600-39125800 | Weak transcription | Fetal Heart | heart |
