Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11619515	0.92[ASN][1000 genomes]
rs12584346	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12586037	0.93[ASN][1000 genomes]
rs12586118	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335810	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16975261	0.98[ASN][1000 genomes]
rs16975294	0.94[ASN][1000 genomes]
rs2154074	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2154075	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4773119	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4773120	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4773121	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56300260	0.93[ASN][1000 genomes]
rs56319655	0.92[ASN][1000 genomes]
rs60825883	0.90[ASN][1000 genomes]
rs61129667	0.92[ASN][1000 genomes]
rs61361143	0.93[AFR][1000 genomes]
rs72652054	0.92[ASN][1000 genomes]
rs7982209	0.83[ASN][1000 genomes]
rs7990241	0.88[ASN][1000 genomes]
rs9521594	0.83[ASN][1000 genomes]
rs9583458	1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.88[ASN][1000 genomes]
rs9588093	1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442659	chr13:110711145-110747162	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3425970	chr13:110711165-110747132	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110707600-110714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110709600-110714400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:110711000-110714800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:110713800-110716200	Enhancers	Liver	Liver
5	chr13:110714000-110714800	Enhancers	Adipose Nuclei	Adipose
6	chr13:110714000-110714800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr13:110714000-110715800	Enhancers	HMEC	breast
8	chr13:110714000-110716000	Enhancers	Pancreas	Pancrea
9	chr13:110714000-110716200	Enhancers	Right Ventricle	heart
10	chr13:110714000-110716400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr13:110714200-110715400	Weak transcription	Lung	lung
12	chr13:110714200-110715400	Enhancers	NHEK	skin
13	chr13:110714200-110715800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr13:110714200-110716200	Enhancers	HSMMtube	muscle

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