Variant report

Variant	rs16975288
Chromosome Location	chr13:110722876-110722877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16975280	1.00[ASN][1000 genomes]
rs16975298	1.00[ASN][1000 genomes]
rs16975320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57770325	0.85[EUR][1000 genomes]
rs58737693	0.85[EUR][1000 genomes]
rs7319411	0.82[EUR][1000 genomes]
rs73622485	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442659	chr13:110711145-110747162	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3425970	chr13:110711165-110747132	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110717800-110723000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:110722000-110723000	Enhancers	HSMMtube	muscle
3	chr13:110722000-110723600	Enhancers	HSMM	muscle
4	chr13:110722200-110723200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:110722200-110723600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:110722200-110723600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:110722200-110724000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:110722200-110724000	Enhancers	HMEC	breast
9	chr13:110722200-110724000	Enhancers	NHEK	skin
10	chr13:110722200-110725800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:110722200-110726200	Weak transcription	Brain Germinal Matrix	brain
12	chr13:110722400-110723200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:110722400-110723400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:110722400-110723600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:110722600-110723000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:110722600-110723000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr13:110722600-110723200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr13:110722600-110723600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:110722800-110723400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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