Variant report

Variant	rs16976167
Chromosome Location	chr18:40057240-40057241
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16975902	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909572	chr18:39938510-40064000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1055622	chr18:40040474-40057755	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	nsv1056192	chr18:40040474-40058395	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv576736	chr18:40042007-40057525	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1059650	chr18:40044096-40057284	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv1062292	chr18:40044096-40057755	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1055614	chr18:40049038-40062317	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv1056694	chr18:40049038-40082667	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv2762899	chr18:40049050-40058395	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv576737	chr18:40050363-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv3316757	chr18:40053713-40057996	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv471800	chr18:40053772-40057679	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3316755	chr18:40053943-40057768	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3316756	chr18:40053979-40057849	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3316754	chr18:40053995-40057738	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3329959	chr18:40054040-40057673	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv3316758	chr18:40054078-40057655	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv2656066	chr18:40054080-40057654	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv2656273	chr18:40054080-40057654	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv2656423	chr18:40054080-40057654	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv10284	chr18:40054080-40057679	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
26	nsv576745	chr18:40054104-40057240	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
27	esv2656069	chr18:40054104-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	esv2656101	chr18:40054104-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	esv2656198	chr18:40054104-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
30	esv2656260	chr18:40054104-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv2656304	chr18:40054104-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	nsv576746	chr18:40054104-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
33	nsv576747	chr18:40054104-40058395	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
34	nsv576748	chr18:40054104-40059621	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
35	nsv576753	chr18:40054268-40057240	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
36	nsv576754	chr18:40054268-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
37	nsv576755	chr18:40054486-40057240	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
38	nsv576756	chr18:40054486-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
39	nsv576757	chr18:40054711-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
40	nsv576758	chr18:40054893-40057240	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
41	nsv576759	chr18:40054893-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
42	nsv576760	chr18:40055079-40057525	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
43	nsv576761	chr18:40055349-40057240	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
44	nsv576762	chr18:40055349-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
45	nsv576763	chr18:40055561-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
46	nsv576764	chr18:40055737-40057525	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
47	esv2421511	chr18:40055787-40057767	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
48	nsv817790	chr18:40055787-40058893	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
49	nsv514867	chr18:40056410-40057730	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
50	nsv1058002	chr18:40056557-40076785	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40057000-40057400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links