Variant report

Variant	rs16976632
Chromosome Location	chr18:11748525-11748526
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1005270	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs16976627	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs1895689	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs2052660	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2052661	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2113738	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2113739	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2866279	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs4625786	0.82[CEU][hapmap]
rs7359728	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8090628	0.80[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap]
rs8091359	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs8095592	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap]
rs9951752	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11743000-11749600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:11743200-11749600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:11747600-11751200	Weak transcription	Brain Anterior Caudate	brain
4	chr18:11748000-11750400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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