Variant report

Variant	rs16976731
Chromosome Location	chr15:56380284-56380285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56379651..56381726-chr15:56393223..56394783,2	MCF-7	breast:
2	chr15:56375041..56376639-chr15:56378973..56381059,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16976751	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56363600-56383800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:56369800-56385600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:56374800-56381600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:56375000-56381600	Weak transcription	HMEC	breast
5	chr15:56375000-56385000	Weak transcription	NHEK	skin
6	chr15:56375000-56385800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:56375000-56386000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:56375200-56382800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:56375200-56384600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:56375400-56385400	Weak transcription	Placenta	Placenta
11	chr15:56375600-56386200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:56378200-56384000	Weak transcription	Primary B cells from cord blood	blood
13	chr15:56378200-56385200	Weak transcription	Fetal Kidney	kidney
14	chr15:56378400-56385400	Weak transcription	Primary T cells from cord blood	blood
15	chr15:56378400-56385600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:56378400-56385600	Weak transcription	HSMMtube	muscle
17	chr15:56378600-56385600	Weak transcription	Aorta	Aorta
18	chr15:56378800-56386200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:56379000-56386600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:56379000-56386600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:56379200-56383800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:56379200-56385400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:56379200-56385600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:56379200-56386400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:56379400-56381000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:56379400-56383200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:56379800-56381400	Weak transcription	A549	lung
28	chr15:56379800-56382000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:56379800-56383800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:56379800-56385200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:56379800-56385800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:56379800-56385800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:56380000-56383400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:56380000-56384000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:56380000-56385000	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr15:56380000-56385600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr15:56380200-56383200	Weak transcription	HSMM	muscle
38	chr15:56380200-56385200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:56380200-56386200	Weak transcription	Fetal Brain Male	brain

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