Variant report

Variant	rs16976834
Chromosome Location	chr15:56527828-56527829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56521792..56524721-chr15:56527729..56529667,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16976751	1.00[YRI][hapmap]
rs16976805	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2760380	chr15:56510123-56529955	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56508000-56534400	Weak transcription	Fetal Heart	heart
2	chr15:56509000-56533600	Weak transcription	Osteobl	bone
3	chr15:56510600-56528600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:56513800-56530200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr15:56514000-56535000	Weak transcription	Pancreas	Pancrea
6	chr15:56514600-56532400	Weak transcription	HSMMtube	muscle
7	chr15:56514800-56534800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:56515800-56529200	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:56519400-56528400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:56520200-56530200	ZNF genes & repeats	Dnd41	blood
11	chr15:56521200-56528000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:56521400-56532000	ZNF genes & repeats	GM12878-XiMat	blood
13	chr15:56522800-56533600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:56524600-56532000	Weak transcription	NHEK	skin
15	chr15:56524600-56532400	Weak transcription	HSMM	muscle
16	chr15:56524600-56533800	Weak transcription	Aorta	Aorta
17	chr15:56524600-56534800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:56524800-56531800	Weak transcription	NH-A	brain
19	chr15:56524800-56532000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:56524800-56533600	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:56524800-56533600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:56524800-56533800	Weak transcription	Ovary	ovary
23	chr15:56524800-56534800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:56524800-56534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:56524800-56534800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:56524800-56534800	Weak transcription	Small Intestine	intestine
27	chr15:56524800-56535000	Weak transcription	Esophagus	oesophagus
28	chr15:56525000-56529600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:56525000-56529800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:56525000-56533400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:56525000-56533600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr15:56525200-56529800	Weak transcription	Brain Anterior Caudate	brain
33	chr15:56525200-56531000	Weak transcription	Left Ventricle	heart
34	chr15:56525200-56531200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:56525400-56533600	Weak transcription	Brain Substantia Nigra	brain
36	chr15:56525400-56534800	Weak transcription	Placenta	Placenta
37	chr15:56525400-56535000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:56525600-56530000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:56525600-56532400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:56525600-56533600	Weak transcription	Fetal Stomach	stomach
41	chr15:56525600-56535000	Weak transcription	Lung	lung
42	chr15:56525800-56528400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:56525800-56532000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:56525800-56533200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr15:56525800-56533400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:56525800-56533800	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:56526000-56528600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr15:56526000-56532400	Weak transcription	Brain Germinal Matrix	brain
49	chr15:56526000-56532400	Weak transcription	NHDF-Ad	bronchial
50	chr15:56526000-56533400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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