Variant report

Variant	rs16977070
Chromosome Location	chr15:57056325-57056326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4297632	0.83[AMR][1000 genomes]
rs4609781	0.83[AMR][1000 genomes]
rs73409264	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57052000-57057200	Weak transcription	Primary B cells from cord blood	blood
2	chr15:57052200-57057800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:57052400-57059800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr15:57052600-57057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:57052600-57057600	Weak transcription	Placenta	Placenta
6	chr15:57052800-57057200	Weak transcription	HSMMtube	muscle
7	chr15:57053000-57056400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:57053000-57056400	Weak transcription	NH-A	brain
9	chr15:57053000-57057200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:57053000-57057200	Weak transcription	NHLF	lung
11	chr15:57053200-57057000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:57053200-57057200	Weak transcription	HSMM	muscle
13	chr15:57053200-57057200	Weak transcription	Osteobl	bone
14	chr15:57053200-57057400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:57053200-57057400	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:57053200-57057400	Weak transcription	HMEC	breast
17	chr15:57053200-57057400	Weak transcription	NHDF-Ad	bronchial
18	chr15:57053200-57065200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:57053400-57057200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:57053400-57057400	Weak transcription	NHEK	skin
21	chr15:57054800-57058000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:57055000-57057800	Enhancers	Adipose Nuclei	Adipose
23	chr15:57055400-57056600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr15:57055400-57058000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:57055400-57058000	Enhancers	Fetal Lung	lung
26	chr15:57055400-57058000	Enhancers	Fetal Stomach	stomach
27	chr15:57055400-57058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:57055400-57060200	Enhancers	HUVEC	blood vessel
29	chr15:57055600-57056400	Weak transcription	Fetal Brain Male	brain
30	chr15:57055600-57056800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr15:57055600-57058000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr15:57055800-57056400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:57055800-57056600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr15:57055800-57056800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr15:57055800-57057800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr15:57055800-57058200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:57056000-57056800	Weak transcription	Small Intestine	intestine
38	chr15:57056000-57057000	Weak transcription	Fetal Brain Female	brain
39	chr15:57056200-57056400	Enhancers	Primary T cells from cord blood	blood
40	chr15:57056200-57056600	Enhancers	Skeletal Muscle Female	skeletal muscle

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