Variant report

Variant rs16977205
Chromosome Location chr18:12445805-12445806
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:12420600-12477600 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr18:12421200-12447600 Weak transcription Placenta Amnion Placenta Amnion
3 chr18:12421200-12452800 Weak transcription Colonic Mucosa Colon
4 chr18:12431000-12447600 Weak transcription NH-A brain
5 chr18:12431000-12449200 Weak transcription Pancreas Pancrea
6 chr18:12431200-12447800 Weak transcription NHEK skin
7 chr18:12432600-12447000 Weak transcription HMEC breast
8 chr18:12433000-12448800 Weak transcription HUVEC blood vessel
9 chr18:12433200-12449200 Weak transcription H9 Cell Line embryonic stem cell
10 chr18:12433200-12449200 Weak transcription Gastric stomach
11 chr18:12433200-12449200 Weak transcription Spleen Spleen
12 chr18:12433200-12450200 Weak transcription Thymus Thymus
13 chr18:12433200-12464600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr18:12433400-12458600 Weak transcription HepG2 liver
15 chr18:12434200-12477000 Weak transcription Esophagus oesophagus
16 chr18:12435200-12449000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr18:12438200-12449200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr18:12439200-12448800 Weak transcription NHLF lung
19 chr18:12439400-12468200 Weak transcription K562 blood
20 chr18:12441400-12446000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
21 chr18:12441600-12452200 Weak transcription Hela-S3 cervix
22 chr18:12442000-12459200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr18:12443000-12446000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr18:12443200-12457400 Strong transcription HSMM muscle
25 chr18:12443600-12446000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
26 chr18:12443600-12446000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr18:12443600-12446000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr18:12443600-12446200 Strong transcription Fetal Adrenal Gland Adrenal Gland
29 chr18:12443600-12454600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr18:12443800-12446200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
31 chr18:12444000-12449000 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr18:12444000-12460200 Weak transcription Fetal Intestine Large intestine
33 chr18:12444000-12467400 Weak transcription A549 lung
34 chr18:12444200-12463200 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr18:12444400-12446000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr18:12444400-12448200 Weak transcription NHDF-Ad bronchial
37 chr18:12444400-12453400 Weak transcription Small Intestine intestine
38 chr18:12444400-12458600 Weak transcription Fetal Heart heart
39 chr18:12444400-12465800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr18:12444600-12446000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr18:12444600-12447000 Weak transcription Brain Substantia Nigra brain
42 chr18:12444600-12447200 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr18:12444600-12447400 Weak transcription Brain Cingulate Gyrus brain
44 chr18:12444600-12448000 Weak transcription Brain Hippocampus Middle brain
45 chr18:12444600-12448400 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr18:12444600-12449000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr18:12444600-12449000 Weak transcription Brain Anterior Caudate brain
48 chr18:12444600-12449200 Weak transcription H1 Cell Line embryonic stem cell
49 chr18:12444600-12450200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr18:12444600-12455800 Weak transcription Fetal Kidney kidney

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