Variant report

Variant	rs16977403
Chromosome Location	chr15:57622406-57622407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:57622263-57622531	K562	blood:	n/a	n/a
2	RCOR1	chr15:57621869-57622547	K562	blood:	n/a	n/a
3	JUND	chr15:57621841-57622820	K562	blood:	n/a	chr15:57622700-57622708
4	MYC	chr15:57622127-57622749	NB4	blood:	n/a	n/a
5	NR2F2	chr15:57622089-57622624	K562	blood:	n/a	n/a
6	ELF1	chr15:57622203-57622559	K562	blood:	n/a	chr15:57622382-57622395
7	MAX	chr15:57621891-57622683	NB4	blood:	n/a	n/a
8	EP300	chr15:57622241-57622545	K562	blood:	n/a	chr15:57622291-57622307
9	TEAD4	chr15:57622178-57622621	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57600919..57606103-chr15:57620754..57624822,5	K562	blood:
2	chr15:57616601..57618515-chr15:57622221..57625785,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260870	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57370276	0.93[AFR][1000 genomes]
rs58976674	0.98[AFR][1000 genomes]
rs61009558	0.93[AFR][1000 genomes]
rs73419405	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57613000-57626800	Weak transcription	Right Atrium	heart
2	chr15:57613000-57635400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:57616200-57624600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:57616200-57624800	Weak transcription	Lung	lung
5	chr15:57617600-57624800	Enhancers	Fetal Muscle Leg	muscle
6	chr15:57617600-57625800	Weak transcription	A549	lung
7	chr15:57618600-57632000	Weak transcription	Spleen	Spleen
8	chr15:57619000-57623400	Enhancers	HSMM	muscle
9	chr15:57620600-57626200	Weak transcription	Fetal Intestine Small	intestine
10	chr15:57620800-57623000	Enhancers	Fetal Muscle Trunk	muscle
11	chr15:57620800-57625800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:57621000-57622800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:57621000-57623400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:57621000-57624400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:57621000-57626600	Weak transcription	Fetal Lung	lung
16	chr15:57621400-57623200	Enhancers	K562	blood
17	chr15:57621800-57622800	Enhancers	NH-A	brain
18	chr15:57621800-57623000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:57622000-57623200	Enhancers	HSMMtube	muscle
20	chr15:57622200-57622600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:57622200-57622600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr15:57622200-57622600	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:57622200-57622600	Enhancers	Thymus	Thymus
24	chr15:57622200-57622800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:57622200-57622800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:57622200-57622800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:57622200-57623000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:57622400-57622600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:57622400-57622600	Enhancers	Hela-S3	cervix
30	chr15:57622400-57622600	Enhancers	NHLF	lung
31	chr15:57622400-57623400	Enhancers	Osteobl	bone

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