Variant report

Variant	rs16978540
Chromosome Location	chr18:43904196-43904197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr18:43904124-43905345	Hela-S3	cervix:	n/a	n/a
2	USF2	chr18:43904087-43905051	Hela-S3	cervix:	n/a	n/a
3	SPI1	chr18:43904010-43904992	HL-60	blood:	n/a	chr18:43904109-43904122 chr18:43904239-43904248
4	USF1	chr18:43904102-43905043	ECC-1	luminal epithelium:	n/a	n/a
5	USF1	chr18:43904193-43904562	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43888531..43891437-chr18:43902755..43904881,2	MCF-7	breast:

Variant related genes	Relation type
RNF165	TF binding region

rs_ID	r²[population]
rs16978541	0.85[AMR][1000 genomes]
rs60739344	0.93[AMR][1000 genomes]
rs73953817	0.93[AMR][1000 genomes]
rs8085844	0.85[AMR][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43899800-43905000	Enhancers	HMEC	breast
2	chr18:43901200-43905600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:43901800-43904200	Weak transcription	K562	blood
4	chr18:43902200-43904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:43902200-43904400	Weak transcription	Fetal Lung	lung
6	chr18:43902600-43905400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr18:43902800-43904200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr18:43902800-43904200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr18:43902800-43904200	Weak transcription	Lung	lung
10	chr18:43902800-43904400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr18:43902800-43905000	Enhancers	NHEK	skin
12	chr18:43902800-43905800	Weak transcription	Esophagus	oesophagus
13	chr18:43902800-43906200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr18:43903000-43904200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr18:43903000-43904400	Weak transcription	A549	lung
16	chr18:43903200-43904200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr18:43903200-43904200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr18:43903200-43904200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr18:43903200-43904200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr18:43903200-43904200	Weak transcription	NH-A	brain
21	chr18:43903200-43904400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr18:43903200-43904400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:43903200-43904400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr18:43903200-43904400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr18:43903200-43909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr18:43903200-43909800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr18:43903400-43904400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr18:43903400-43904600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr18:43903600-43904200	Enhancers	Hela-S3	cervix
30	chr18:43903600-43905000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr18:43903800-43904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:43903800-43904600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr18:43904000-43904200	Enhancers	Dnd41	blood
34	chr18:43904000-43904800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr18:43904000-43904800	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr18:43904000-43904800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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