Variant report

Variant	rs16978759
Chromosome Location	chr19:38476683-38476684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38393241..38399415-chr19:38476540..38485383,15	MCF-7	breast:
2	chr19:38396081..38398785-chr19:38474109..38477467,3	MCF-7	breast:
3	chr19:38471726..38473895-chr19:38475514..38478507,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171804	Chromatin interaction
ENSG00000105738	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs833910	0.85[JPT][hapmap]
rs833918	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38461600-38493600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr19:38461600-38493600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr19:38461800-38476800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr19:38463800-38484800	Weak transcription	Fetal Stomach	stomach
5	chr19:38468200-38483600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr19:38469200-38479600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr19:38470800-38477200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:38470800-38494000	Weak transcription	Right Ventricle	heart
9	chr19:38471000-38476800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr19:38471200-38493800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr19:38471400-38477000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:38471400-38483600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr19:38471400-38488600	Weak transcription	NHLF	lung
14	chr19:38471600-38477000	Weak transcription	Fetal Muscle Leg	muscle
15	chr19:38472200-38481200	Weak transcription	NHDF-Ad	bronchial
16	chr19:38472400-38493800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:38472600-38480400	Enhancers	Primary B cells from cord blood	blood
18	chr19:38472600-38480400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr19:38472600-38481000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:38472800-38476800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr19:38472800-38476800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr19:38472800-38477000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr19:38472800-38478200	Weak transcription	Osteobl	bone
24	chr19:38472800-38489600	Weak transcription	Fetal Kidney	kidney
25	chr19:38473200-38482000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr19:38473200-38482600	Weak transcription	HSMM	muscle
27	chr19:38473200-38488600	Weak transcription	HSMMtube	muscle
28	chr19:38473600-38478200	Weak transcription	Lung	lung
29	chr19:38473600-38479400	Weak transcription	Pancreas	Pancrea
30	chr19:38473600-38480800	Weak transcription	Small Intestine	intestine
31	chr19:38473800-38478200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr19:38474000-38477400	Enhancers	Brain Hippocampus Middle	brain
33	chr19:38474200-38478200	Weak transcription	Colonic Mucosa	Colon
34	chr19:38474200-38478200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr19:38474400-38476800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr19:38474400-38481000	Weak transcription	Esophagus	oesophagus
37	chr19:38474600-38478000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr19:38474800-38476800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:38474800-38478000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr19:38474800-38478200	Weak transcription	Placenta	Placenta
41	chr19:38474800-38481200	Weak transcription	Stomach Mucosa	stomach
42	chr19:38474800-38513600	Weak transcription	Gastric	stomach
43	chr19:38475000-38488600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr19:38475200-38476800	Enhancers	GM12878-XiMat	blood
45	chr19:38475200-38479400	Weak transcription	NH-A	brain
46	chr19:38475400-38477000	Weak transcription	NHEK	skin
47	chr19:38475400-38478000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr19:38475400-38479200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr19:38475400-38479800	Enhancers	Primary B cells from peripheral blood	blood
50	chr19:38475400-38481000	Weak transcription	Brain Inferior Temporal Lobe	brain

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