Variant report

Variant rs16978897
Chromosome Location chr21:47550595-47550596
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:47530800-47563600 Weak transcription Right Atrium heart
2 chr21:47535000-47554800 Weak transcription iPS-18 Cell Line embryonic stem cell
3 chr21:47535200-47551000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr21:47535200-47552000 Strong transcription Breast Myoepithelial Primary Cells Breast
5 chr21:47535200-47552000 Strong transcription NHLF lung
6 chr21:47535200-47552400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr21:47535200-47552800 Strong transcription Fetal Muscle Leg muscle
8 chr21:47535600-47551000 Strong transcription Fetal Intestine Small intestine
9 chr21:47538200-47563600 Weak transcription Brain Anterior Caudate brain
10 chr21:47542400-47552000 Weak transcription HSMM muscle
11 chr21:47542600-47551200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr21:47542600-47551400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr21:47542600-47552400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr21:47542800-47550600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr21:47542800-47552400 Strong transcription NHDF-Ad bronchial
16 chr21:47543600-47553800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr21:47544000-47553400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
18 chr21:47544200-47553800 Strong transcription Osteobl bone
19 chr21:47545000-47556200 Weak transcription HSMMtube muscle
20 chr21:47546000-47550800 Enhancers Fetal Heart heart
21 chr21:47546200-47556200 Weak transcription Fetal Lung lung
22 chr21:47546400-47551400 Weak transcription Rectal Smooth Muscle rectum
23 chr21:47546400-47552000 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr21:47546800-47552000 Weak transcription Esophagus oesophagus
25 chr21:47547600-47558400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
26 chr21:47547800-47555000 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr21:47548000-47557200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr21:47548000-47563600 Weak transcription Gastric stomach
29 chr21:47548200-47555000 Weak transcription H9 Cell Line embryonic stem cell
30 chr21:47548200-47557600 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr21:47548600-47550600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr21:47548600-47550600 Strong transcription Fetal Muscle Trunk muscle
33 chr21:47548600-47552000 Weak transcription Liver Liver
34 chr21:47548800-47552600 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr21:47548800-47553400 Strong transcription Fetal Stomach stomach
36 chr21:47549000-47550800 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
37 chr21:47549200-47551000 Weak transcription Lung lung
38 chr21:47549200-47553000 Weak transcription NH-A brain
39 chr21:47549200-47556800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr21:47549400-47551000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr21:47549400-47553000 Weak transcription Colonic Mucosa Colon
42 chr21:47549400-47557000 Weak transcription H1 Cell Line embryonic stem cell
43 chr21:47549400-47557800 Weak transcription Aorta Aorta
44 chr21:47549600-47551400 Weak transcription Fetal Intestine Large intestine
45 chr21:47549600-47552800 Weak transcription Colon Smooth Muscle Colon
46 chr21:47549600-47553000 Weak transcription iPS-15b Cell Line embryonic stem cell
47 chr21:47549600-47553800 Weak transcription Adipose Nuclei Adipose
48 chr21:47549600-47555200 Weak transcription Left Ventricle heart
49 chr21:47549800-47551000 Active TSS Spleen Spleen
50 chr21:47549800-47563600 Weak transcription Brain Inferior Temporal Lobe brain

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