The 2.0 version of rSNPBase

Variant report

Variant rs169800
Chromosome Location chr5:102884487-102884488
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:102874200-102897400 Weak transcription Pancreas Pancrea
2 chr5:102875400-102887800 Weak transcription Primary hematopoietic stem cells blood
3 chr5:102875800-102897800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr5:102876600-102886000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr5:102876800-102887800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr5:102877000-102886000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr5:102877200-102888000 Weak transcription Stomach Mucosa stomach
8 chr5:102878400-102887800 Weak transcription Rectal Smooth Muscle rectum
9 chr5:102878600-102885800 Weak transcription Osteobl bone
10 chr5:102878800-102886400 Weak transcription Muscle Satellite Cultured Cells --
11 chr5:102879800-102897200 Weak transcription Brain Germinal Matrix brain
12 chr5:102879800-102897400 Weak transcription Brain Hippocampus Middle brain
13 chr5:102880000-102885400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr5:102880200-102886600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr5:102880200-102886800 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr5:102880200-102897200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr5:102880800-102886600 Weak transcription Left Ventricle heart
18 chr5:102881000-102885400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:102881200-102884800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr5:102881200-102897800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr5:102882200-102886800 Weak transcription HSMM muscle
22 chr5:102882400-102897400 Weak transcription Psoas Muscle Psoas
23 chr5:102882800-102897400 Weak transcription Fetal Heart heart
24 chr5:102882800-102897600 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr5:102883000-102889200 Weak transcription Colon Smooth Muscle Colon
26 chr5:102883200-102897400 Weak transcription GM12878-XiMat blood
27 chr5:102883600-102885400 Weak transcription Liver Liver
28 chr5:102883800-102885400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr5:102883800-102885600 Weak transcription Adipose Nuclei Adipose
30 chr5:102884000-102885600 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr5:102884000-102885600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr5:102884000-102885600 Weak transcription HMEC breast
33 chr5:102884000-102886600 Weak transcription Fetal Lung lung
34 chr5:102884000-102891600 Weak transcription Gastric stomach
35 chr5:102884200-102885800 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr5:102884200-102885800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr5:102884200-102885800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr5:102884200-102885800 Weak transcription Stomach Smooth Muscle stomach
39 chr5:102884200-102886000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr5:102884200-102886000 Weak transcription Fetal Kidney kidney
41 chr5:102884200-102889200 Weak transcription Primary monocytes fromperipheralblood blood
42 chr5:102884200-102894000 Weak transcription NHEK skin
43 chr5:102884400-102886000 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr5:102884400-102886200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr5:102884400-102886600 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015