Variant report

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:22542551-22545334	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:22544708-22545141	HepG2	liver:	n/a	n/a
3	POLR2A	chr20:22539124-22546431	HepG2	liver:	n/a	n/a
4	POLR2A	chr20:22543786-22545151	HepG2	liver:	n/a	n/a
5	POLR2A	chr20:22539677-22547334	HepG2	liver:	n/a	n/a
6	CEBPB	chr20:22544716-22545032	HepG2	liver:	n/a	chr20:22544870-22544881
7	MBD4	chr20:22543455-22545081	HepG2	liver:	n/a	n/a
8	SMC3	chr20:22544903-22545102	HepG2	liver:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXA2-2	chr20:22541191-22545754	ENSG00000225074
2	lnc-FOXA2-2	chr20:22544533-22545754	XLOC_013684
3	lnc-FOXA2-2	chr20:22544288-22545754	XLOC_013684
4	lnc-FOXA2-2	chr20:22541194-22545754	XLOC_013684
5	lnc-FOXA2-2	chr20:22544754-22545754	NONHSAT078988
6	lnc-FOXA2-2	chr20:22540989-22545754	NONHSAT078989
7	lnc-FOXA2-2	chr20:22544754-22545754	NONHSAT078990
8	lnc-FOXA2-2	chr20:22544533-22545754	NONHSAT078993
9	lnc-FOXA2-2	chr20:22541216-22545754	NONHSAT078994
10	lnc-FOXA2-2	chr20:22541192-22545754	NR_001558

No data

Variant related genes	Relation type
LINC00261	TF binding region

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6036174	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16984124	PRSS21	trans	lymphoblastoid	seeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
2	chr20:22539400-22545200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:22540000-22548800	Weak transcription	Gastric	stomach
4	chr20:22541200-22545000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr20:22541400-22545200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:22542800-22545000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr20:22543200-22548000	Weak transcription	K562	blood
8	chr20:22543400-22545200	Enhancers	Stomach Mucosa	stomach
9	chr20:22543600-22547800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr20:22544000-22545200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr20:22544200-22545000	Genic enhancers	Pancreas	Pancrea
12	chr20:22544200-22547000	Genic enhancers	HepG2	liver
13	chr20:22544400-22545000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr20:22544400-22545000	Bivalent Enhancer	Fetal Lung	lung
15	chr20:22544400-22546400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr20:22544400-22548000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr20:22544600-22549400	Genic enhancers	Liver	Liver
18	chr20:22544800-22545200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

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