Variant report

Variant	rs16984599
Chromosome Location	chrX:104263008-104263009
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16984597	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16984608	1.00[ASW][hapmap];0.92[LWK][hapmap];0.86[MKK][hapmap];0.94[YRI][hapmap]
rs16984612	1.00[ASW][hapmap];0.92[LWK][hapmap];0.96[MKK][hapmap];0.94[YRI][hapmap]
rs16985118	0.83[LWK][hapmap]
rs4494036	0.82[YRI][hapmap]
rs957861	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:104262000-104263200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:104262200-104263200	Enhancers	HMEC	breast
3	chrX:104262600-104263200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chrX:104262800-104263400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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