Variant report

Variant	rs16984855
Chromosome Location	chr22:27898316-27898317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16984850	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834167	chr22:27758395-27910985	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv834168	chr22:27859692-28061869	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27885000-27902800	Weak transcription	Aorta	Aorta
2	chr22:27893000-27899600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr22:27893000-27899600	Weak transcription	NHEK	skin
4	chr22:27893000-27899800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr22:27895600-27899600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr22:27896200-27898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:27896400-27898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr22:27896600-27898600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr22:27897000-27898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr22:27897200-27898600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr22:27897600-27900400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr22:27897800-27899800	Weak transcription	Fetal Muscle Leg	muscle
13	chr22:27897800-27899800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr22:27897800-27900000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr22:27897800-27900000	Weak transcription	Psoas Muscle	Psoas
16	chr22:27897800-27900000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr22:27897800-27900200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr22:27897800-27900400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr22:27897800-27902800	Weak transcription	Pancreas	Pancrea
20	chr22:27898000-27898400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr22:27898200-27898600	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links