Variant report

Variant	rs169863
Chromosome Location	chr8:96174718-96174719
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96161791..96169135-chr8:96169356..96174766,9	MCF-7	breast:
2	chr8:96170992..96173678-chr8:96173856..96175498,2	K562	blood:
3	chr8:96154262..96156511-chr8:96173163..96174743,2	MCF-7	breast:
4	chr8:96173200..96176100-chr8:96203502..96205695,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10090946	1.00[ASN][1000 genomes]
rs10956937	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956940	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249202	1.00[ASN][1000 genomes]
rs16917378	1.00[CHB][hapmap]
rs169864	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192714	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297555	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3174076	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6998622	1.00[ASN][1000 genomes]
rs7839455	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv819397	chr8:96168255-96177678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96150400-96179200	Weak transcription	Fetal Lung	lung
2	chr8:96162400-96178800	Weak transcription	NH-A	brain
3	chr8:96163200-96175400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:96164600-96174800	Weak transcription	HUVEC	blood vessel
5	chr8:96164800-96175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:96165800-96175000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:96166000-96175000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:96167200-96174800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:96167200-96178600	Weak transcription	Right Ventricle	heart
10	chr8:96167200-96179200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:96167200-96179400	Weak transcription	Brain Angular Gyrus	brain
12	chr8:96167200-96179600	Weak transcription	Brain Anterior Caudate	brain
13	chr8:96167200-96179600	Weak transcription	Left Ventricle	heart
14	chr8:96167200-96181600	Weak transcription	Small Intestine	intestine
15	chr8:96167400-96174800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:96167400-96175000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:96167400-96179600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:96167600-96180600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr8:96167600-96181400	Weak transcription	Liver	Liver
20	chr8:96169400-96181000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:96169600-96176000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr8:96169800-96175800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr8:96169800-96175800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr8:96170000-96180200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr8:96170200-96179600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:96170200-96181000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr8:96171000-96175000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:96171800-96179400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr8:96172200-96182600	Enhancers	Primary B cells from peripheral blood	blood
30	chr8:96172400-96178200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:96172400-96179200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:96172400-96179200	Weak transcription	Fetal Brain Female	brain
33	chr8:96172400-96180600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:96172400-96181600	Weak transcription	Lung	lung
35	chr8:96172600-96174800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:96172600-96175800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:96172600-96175800	Weak transcription	Thymus	Thymus
38	chr8:96172600-96177000	Enhancers	Primary B cells from cord blood	blood
39	chr8:96172600-96177400	Weak transcription	Aorta	Aorta
40	chr8:96172600-96177600	Weak transcription	Brain Germinal Matrix	brain
41	chr8:96172600-96177800	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:96172600-96179200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr8:96172600-96179200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:96172600-96179200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:96172600-96179400	Weak transcription	Esophagus	oesophagus
46	chr8:96172600-96180600	Weak transcription	Fetal Intestine Small	intestine
47	chr8:96172600-96181000	Weak transcription	Spleen	Spleen
48	chr8:96172600-96181800	Weak transcription	Pancreas	Pancrea
49	chr8:96172600-96186400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr8:96172600-96186800	Weak transcription	Gastric	stomach

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