Variant report

Variant	rs16986354
Chromosome Location	chr22:28754648-28754649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28746054..28748860-chr22:28753895..28756337,2	K562	blood:
2	chr22:28745543..28747734-chr22:28752651..28754673,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs134170	0.88[LWK][hapmap];1.00[YRI][hapmap]
rs134184	1.00[YRI][hapmap]
rs134185	0.85[LWK][hapmap]
rs134187	0.85[LWK][hapmap]
rs134195	0.84[JPT][hapmap]
rs16986420	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16986431	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16986442	0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs16986489	0.84[MEX][hapmap];0.84[AMR][1000 genomes]
rs16986544	0.88[AMR][1000 genomes]
rs4615019	0.84[AMR][1000 genomes]
rs4638900	0.84[AMR][1000 genomes]
rs5762508	1.00[CEU][hapmap]
rs5762511	1.00[CHB][hapmap];0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28741600-28759000	Weak transcription	Fetal Stomach	stomach
2	chr22:28742800-28759600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr22:28743000-28759000	Weak transcription	Dnd41	blood
4	chr22:28748000-28755800	Weak transcription	Fetal Intestine Small	intestine
5	chr22:28748000-28759600	Weak transcription	Fetal Lung	lung
6	chr22:28752800-28759000	Weak transcription	Ovary	ovary
7	chr22:28752800-28768600	Weak transcription	Left Ventricle	heart
8	chr22:28753200-28755000	Enhancers	Brain Germinal Matrix	brain
9	chr22:28753800-28754800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr22:28753800-28754800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr22:28753800-28754800	Enhancers	Fetal Brain Female	brain
12	chr22:28753800-28755000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr22:28754000-28754800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr22:28754000-28754800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr22:28754000-28754800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr22:28754000-28755000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr22:28754000-28759400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr22:28754200-28754800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr22:28754200-28754800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr22:28754200-28754800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr22:28754200-28754800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr22:28754200-28754800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr22:28754200-28754800	Enhancers	Fetal Heart	heart
24	chr22:28754200-28755000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr22:28754200-28755000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr22:28754200-28755000	Enhancers	Right Ventricle	heart
27	chr22:28754200-28755800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr22:28754200-28755800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr22:28754200-28756200	Enhancers	Fetal Brain Male	brain
30	chr22:28754400-28754800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr22:28754400-28754800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr22:28754400-28754800	Enhancers	Brain Anterior Caudate	brain
33	chr22:28754400-28759200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr22:28754600-28754800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr22:28754600-28757200	Weak transcription	Fetal Kidney	kidney
36	chr22:28754600-28759200	Weak transcription	Adipose Nuclei	Adipose

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