Variant report

Variant	rs16986684
Chromosome Location	chr20:40852355-40852356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10485685	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11906485	0.94[JPT][hapmap]
rs13045773	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs16986551	1.00[CEU][hapmap]
rs16986558	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2076243	1.00[CEU][hapmap]
rs2076244	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2076245	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs34146816	0.83[EUR][1000 genomes]
rs34602526	0.80[EUR][1000 genomes]
rs4812581	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs57258219	0.84[ASN][1000 genomes]
rs60558568	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74167761	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40851800-40859800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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