Variant report

Variant	rs16986871
Chromosome Location	chr22:29354738-29354739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29353102..29355406-chr22:29355625..29358166,3	MCF-7	breast:
2	chr22:29354374..29356109-chr22:29366625..29368709,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16986711	1.00[CEU][hapmap]
rs16986739	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29346400-29357400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr22:29347600-29356200	Weak transcription	Brain Germinal Matrix	brain
3	chr22:29348200-29365000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr22:29348800-29360400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr22:29349200-29356800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr22:29349200-29365400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr22:29349200-29371800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr22:29349200-29371800	Weak transcription	HSMM	muscle
9	chr22:29349400-29357200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr22:29349400-29357400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr22:29349400-29357400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr22:29349600-29354800	Weak transcription	A549	lung
13	chr22:29349600-29357200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr22:29349600-29359600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:29349800-29360400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr22:29350000-29358400	Weak transcription	Fetal Lung	lung
17	chr22:29350000-29363000	Weak transcription	Liver	Liver
18	chr22:29350000-29372800	Weak transcription	Aorta	Aorta
19	chr22:29350200-29357800	Weak transcription	K562	blood
20	chr22:29350400-29361000	Weak transcription	Ovary	ovary
21	chr22:29350800-29357800	Weak transcription	HSMMtube	muscle
22	chr22:29351400-29362200	Genic enhancers	HepG2	liver
23	chr22:29352200-29354800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr22:29352400-29359600	Weak transcription	Gastric	stomach
25	chr22:29352800-29355000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr22:29352800-29360400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr22:29353000-29355400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr22:29353000-29355600	Weak transcription	Fetal Intestine Small	intestine
29	chr22:29353000-29357200	Weak transcription	Brain Hippocampus Middle	brain
30	chr22:29353000-29358200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr22:29353000-29358200	Weak transcription	Fetal Muscle Leg	muscle
32	chr22:29353000-29359200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr22:29353200-29355000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr22:29353200-29355200	Weak transcription	GM12878-XiMat	blood
35	chr22:29353200-29358000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr22:29353200-29358400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr22:29353400-29355000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr22:29353400-29358400	Weak transcription	Brain Angular Gyrus	brain
39	chr22:29354000-29356000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr22:29354200-29354800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr22:29354200-29355400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr22:29354200-29355400	Enhancers	Brain Substantia Nigra	brain
43	chr22:29354200-29355400	Enhancers	Colon Smooth Muscle	Colon
44	chr22:29354200-29355400	Enhancers	Stomach Smooth Muscle	stomach
45	chr22:29354200-29355600	Enhancers	Rectal Smooth Muscle	rectum
46	chr22:29354400-29354800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr22:29354400-29354800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr22:29354400-29354800	Enhancers	Fetal Kidney	kidney
49	chr22:29354400-29354800	Enhancers	Right Ventricle	heart
50	chr22:29354400-29355200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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