Variant report

Variant	rs16987118
Chromosome Location	chr22:29510796-29510797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29468837..29470571-chr22:29509772..29512355,2	K562	blood:
2	chr22:29508205..29511663-chr22:29545622..29548558,3	K562	blood:

Variant related genes	Relation type
ENSG00000183762	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11912618	1.00[AMR][1000 genomes]
rs16987036	1.00[AMR][1000 genomes]
rs16987102	1.00[AFR][1000 genomes]
rs16987359	1.00[AMR][1000 genomes]
rs58207457	0.88[AFR][1000 genomes]
rs72563104	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29483400-29550200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr22:29486600-29519000	Weak transcription	Fetal Brain Male	brain
3	chr22:29488400-29521200	Weak transcription	Lung	lung
4	chr22:29490000-29514000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr22:29490400-29539800	Weak transcription	Psoas Muscle	Psoas
6	chr22:29491200-29521200	Weak transcription	Colonic Mucosa	Colon
7	chr22:29491600-29522200	Weak transcription	Liver	Liver
8	chr22:29493200-29511600	Weak transcription	Gastric	stomach
9	chr22:29493200-29521000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr22:29493200-29521200	Weak transcription	Pancreas	Pancrea
11	chr22:29493200-29536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr22:29493400-29516400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr22:29493800-29511600	Weak transcription	Fetal Heart	heart
14	chr22:29495200-29516600	Weak transcription	Esophagus	oesophagus
15	chr22:29504800-29521800	Weak transcription	NHEK	skin
16	chr22:29505000-29514000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr22:29505000-29521000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr22:29505800-29511600	Weak transcription	Small Intestine	intestine
19	chr22:29505800-29533000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr22:29506000-29514000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr22:29506000-29521000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr22:29506200-29512200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr22:29506400-29511400	Weak transcription	Left Ventricle	heart
24	chr22:29506400-29511600	Weak transcription	Ovary	ovary
25	chr22:29506400-29511800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr22:29506400-29513800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr22:29506400-29514000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr22:29506400-29516200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr22:29506400-29516400	Weak transcription	Adipose Nuclei	Adipose
30	chr22:29506400-29516400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr22:29506400-29520000	Weak transcription	Fetal Thymus	thymus
32	chr22:29506400-29521000	Weak transcription	Right Ventricle	heart
33	chr22:29506400-29522200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr22:29506400-29522400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr22:29506600-29511000	Weak transcription	Fetal Intestine Small	intestine
36	chr22:29506600-29511800	Weak transcription	Stomach Mucosa	stomach
37	chr22:29506600-29514000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr22:29507000-29512200	Weak transcription	Fetal Kidney	kidney
39	chr22:29507000-29520200	Weak transcription	Thymus	Thymus
40	chr22:29507200-29511800	Weak transcription	Right Atrium	heart
41	chr22:29507400-29511000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr22:29508200-29537200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr22:29509000-29514000	Weak transcription	Placenta	Placenta
44	chr22:29509200-29512200	Strong transcription	Dnd41	blood
45	chr22:29509400-29524400	Weak transcription	NHDF-Ad	bronchial
46	chr22:29509400-29525000	Weak transcription	Osteobl	bone
47	chr22:29509600-29513800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr22:29509800-29511400	Weak transcription	Fetal Muscle Leg	muscle
49	chr22:29509800-29516400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr22:29510000-29511800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links