Variant report
| Variant | rs16987271 |
|---|---|
| Chromosome Location | chr22:29611906-29611907 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:29602800-29616000 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr22:29602800-29616000 | Weak transcription | Ovary | ovary |
| 3 | chr22:29603800-29612600 | Weak transcription | Brain Angular Gyrus | brain |
| 4 | chr22:29604000-29616200 | Weak transcription | Thymus | Thymus |
| 5 | chr22:29604800-29612600 | Weak transcription | Brain Cingulate Gyrus | brain |
| 6 | chr22:29605000-29619400 | Weak transcription | Colonic Mucosa | Colon |
| 7 | chr22:29605400-29612200 | Strong transcription | Fetal Adrenal Gland | Adrenal Gland |
| 8 | chr22:29605400-29612600 | Weak transcription | Fetal Muscle Trunk | muscle |
| 9 | chr22:29605400-29614400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 10 | chr22:29605400-29616000 | Weak transcription | Lung | lung |
| 11 | chr22:29605800-29612400 | Weak transcription | Brain Anterior Caudate | brain |
| 12 | chr22:29605800-29612800 | Strong transcription | Primary hematopoietic stem cells short term culture | blood |
| 13 | chr22:29606000-29612600 | Weak transcription | Brain Hippocampus Middle | brain |
| 14 | chr22:29606200-29616000 | Strong transcription | Fetal Intestine Large | intestine |
| 15 | chr22:29607200-29612600 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 16 | chr22:29607600-29612200 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 17 | chr22:29607600-29615000 | Enhancers | Fetal Brain Male | brain |
| 18 | chr22:29607600-29615200 | Weak transcription | Gastric | stomach |
| 19 | chr22:29607600-29616000 | Strong transcription | Fetal Intestine Small | intestine |
| 20 | chr22:29607600-29621000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 21 | chr22:29607600-29621000 | Weak transcription | Esophagus | oesophagus |
| 22 | chr22:29607800-29614000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 23 | chr22:29607800-29616000 | Weak transcription | Duodenum Mucosa | Duodenum |
| 24 | chr22:29608600-29615200 | Strong transcription | Dnd41 | blood |
| 25 | chr22:29609200-29616400 | Weak transcription | Fetal Kidney | kidney |
| 26 | chr22:29609400-29612200 | Weak transcription | Pancreas | Pancrea |
| 27 | chr22:29609400-29615400 | Strong transcription | Fetal Stomach | stomach |
| 28 | chr22:29609600-29612400 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
| 29 | chr22:29610000-29615600 | Genic enhancers | Spleen | Spleen |
| 30 | chr22:29610200-29612400 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
| 31 | chr22:29610400-29613000 | Weak transcription | Fetal Muscle Leg | muscle |
| 32 | chr22:29611000-29613000 | Strong transcription | Fetal Brain Female | brain |
| 33 | chr22:29611000-29613600 | Enhancers | GM12878-XiMat | blood |
| 34 | chr22:29611200-29612000 | Strong transcription | Placenta Amnion | Placenta Amnion |
| 35 | chr22:29611400-29612200 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 36 | chr22:29611400-29612600 | Strong transcription | Brain Germinal Matrix | brain |
| 37 | chr22:29611400-29616000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 38 | chr22:29611600-29612600 | Strong transcription | Fetal Lung | lung |
| 39 | chr22:29611600-29616000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 40 | chr22:29611600-29616000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 41 | chr22:29611600-29616200 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 42 | chr22:29611600-29620800 | Weak transcription | Primary hematopoietic stem cells | blood |
| 43 | chr22:29611800-29612400 | Strong transcription | Cortex derived primary cultured neurospheres | brain |
| 44 | chr22:29611800-29613400 | Strong transcription | iPS-15b Cell Line | embryonic stem cell |
| 45 | chr22:29611800-29613800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 46 | chr22:29611800-29614400 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 47 | chr22:29611800-29616000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 48 | chr22:29611800-29621400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
