Variant report

Variant	rs1699006
Chromosome Location	chr6:38586211-38586212
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12525759	0.80[ASN][1000 genomes]
rs1699013	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1699020	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1739622	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1739625	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1781739	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1781741	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2748166	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2748168	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2814893	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7769186	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38565400-38589200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:38572000-38591600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:38580600-38600200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:38580600-38601800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:38580800-38589400	Weak transcription	Right Atrium	heart
6	chr6:38580800-38594000	Weak transcription	Small Intestine	intestine
7	chr6:38580800-38604400	Weak transcription	Ovary	ovary
8	chr6:38582200-38587200	Weak transcription	Psoas Muscle	Psoas
9	chr6:38582600-38587200	Weak transcription	Right Ventricle	heart
10	chr6:38583000-38599200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:38583400-38600400	Weak transcription	Left Ventricle	heart
12	chr6:38583800-38602000	Weak transcription	Primary T cells from cord blood	blood
13	chr6:38585200-38588600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:38585400-38586400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:38585600-38586800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:38585600-38586800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:38585600-38587600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:38585800-38586400	Enhancers	HSMMtube	muscle
19	chr6:38585800-38586600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:38585800-38587000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:38585800-38587200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:38585800-38587200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:38585800-38587400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:38585800-38587400	Enhancers	Fetal Heart	heart
25	chr6:38585800-38587600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:38585800-38588200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:38586200-38586800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:38586200-38587600	Enhancers	Osteobl	bone

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