The 2.0 version of rSNPBase

Variant report

Variant rs16990800
Chromosome Location chr21:17260857-17260858
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:17223600-17264400 Weak transcription NHEK skin
2 chr21:17245400-17270400 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr21:17246200-17261600 Weak transcription Right Ventricle heart
4 chr21:17246400-17263400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr21:17248200-17262400 Weak transcription Pancreas Pancrea
6 chr21:17252200-17264600 Weak transcription Hela-S3 cervix
7 chr21:17253000-17263400 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr21:17253000-17268200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr21:17253200-17263400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr21:17253200-17264600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr21:17253200-17268000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr21:17253200-17268000 Weak transcription Left Ventricle heart
13 chr21:17253200-17269000 Weak transcription Psoas Muscle Psoas
14 chr21:17253400-17261600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr21:17253400-17267800 Weak transcription Stomach Smooth Muscle stomach
16 chr21:17253400-17269400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr21:17253600-17267200 Weak transcription Muscle Satellite Cultured Cells --
18 chr21:17254400-17262600 Weak transcription Placenta Placenta
19 chr21:17254800-17262200 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr21:17255200-17262200 Weak transcription Fetal Muscle Trunk muscle
21 chr21:17255400-17267200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr21:17255400-17267400 Weak transcription Rectal Smooth Muscle rectum
23 chr21:17255400-17269600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr21:17255600-17261800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr21:17255600-17262200 Weak transcription Primary monocytes fromperipheralblood blood
26 chr21:17255600-17262400 Weak transcription HUVEC blood vessel
27 chr21:17255600-17264400 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr21:17255600-17267200 Weak transcription Fetal Lung lung
29 chr21:17255800-17262400 Weak transcription Fetal Thymus thymus
30 chr21:17255800-17268000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr21:17255800-17268000 Weak transcription Ovary ovary
32 chr21:17256400-17267200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr21:17256600-17267200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr21:17256600-17267400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr21:17256600-17270400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr21:17256800-17262000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr21:17256800-17268400 Weak transcription A549 lung
38 chr21:17257000-17267800 Weak transcription Adipose Nuclei Adipose
39 chr21:17257400-17267600 Weak transcription HSMMtube muscle
40 chr21:17259800-17261400 Strong transcription HSMM muscle

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Last update: Aug 31, 2015