Variant report

Variant	rs16990837
Chromosome Location	chr22:33002151-33002152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32955430..32957746-chr22:33001702..33003810,2	MCF-7	breast:
2	22:32868055-32872511..22:33001296-33002359	Hela-S3	cervix:
3	22:32920308-32927723..22:33001296-33002359	Hela-S3	cervix:
4	22:31803954-31807204..22:33001296-33002359	Hela-S3	cervix:
5	22:33001296-33002359..22:33262063-33266567	Hela-S3	cervix:
6	22:33001296-33002359..22:33339333-33353583	Hela-S3	cervix:
7	22:32162110-32166713..22:33001296-33002359	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000100150	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000100225	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10427961	0.88[ASN][1000 genomes]
rs13340090	1.00[CHB][hapmap]
rs16985304	1.00[CHB][hapmap]
rs16990836	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs16990846	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16990851	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16990852	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17700898	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs17774399	0.86[CEU][hapmap]
rs3788467	0.85[CEU][hapmap]
rs57696440	0.88[ASN][1000 genomes]
rs59218864	0.88[ASN][1000 genomes]
rs60744960	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60966625	0.91[EUR][1000 genomes]
rs62232743	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62232744	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62232752	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs738994	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7511209	1.00[CHB][hapmap]
rs8137407	1.00[CHB][hapmap]
rs8139704	1.00[CHB][hapmap]
rs8139932	1.00[CHB][hapmap]
rs9619281	1.00[CHB][hapmap]
rs9784225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32998800-33004000	Enhancers	Placenta	Placenta
2	chr22:32999400-33002200	Weak transcription	Fetal Muscle Leg	muscle
3	chr22:32999600-33004000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr22:33000000-33002200	Weak transcription	Fetal Stomach	stomach
5	chr22:33000200-33003400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr22:33000600-33003000	Weak transcription	Right Atrium	heart
7	chr22:33000600-33003200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr22:33000600-33003200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr22:33000600-33003200	Weak transcription	Left Ventricle	heart
10	chr22:33001200-33002200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr22:33001200-33002400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr22:33001200-33002600	Enhancers	HMEC	breast
13	chr22:33001200-33002800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr22:33001200-33003800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr22:33001400-33002200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr22:33001600-33003400	Enhancers	Fetal Thymus	thymus
17	chr22:33001600-33003800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr22:33001600-33004000	Enhancers	Lung	lung
19	chr22:33001800-33003800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr22:33001800-33004000	Enhancers	Spleen	Spleen
21	chr22:33002000-33002200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr22:33002000-33002600	Enhancers	Fetal Kidney	kidney
23	chr22:33002000-33002600	Enhancers	Dnd41	blood
24	chr22:33002000-33003400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr22:33002000-33004000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links