Variant report

Variant	rs16991783
Chromosome Location	chr21:17340597-17340598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11911790	1.00[AMR][1000 genomes]
rs2823523	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv3463	chr21:17327119-17343458	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17339800-17340600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr21:17339800-17340600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr21:17339800-17340600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr21:17339800-17340600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr21:17339800-17340600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr21:17339800-17340800	Enhancers	HMEC	breast
7	chr21:17339800-17340800	Enhancers	HSMM	muscle
8	chr21:17339800-17340800	Enhancers	HSMMtube	muscle
9	chr21:17340000-17340600	Enhancers	NH-A	brain
10	chr21:17340000-17340800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr21:17340200-17340600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr21:17340200-17340600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr21:17340200-17340600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr21:17340400-17340600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr21:17340400-17340800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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