Variant report

Variant	rs16992698
Chromosome Location	chr22:34045229-34045230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11912153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11912667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs11912928	1.00[JPT][hapmap]
rs11913203	1.00[JPT][hapmap]
rs11913899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11914217	0.94[ASN][1000 genomes]
rs16985355	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16992711	1.00[CHB][hapmap];0.83[YRI][hapmap];0.94[ASN][1000 genomes]
rs16992713	0.94[ASN][1000 genomes]
rs16992725	0.94[ASN][1000 genomes]
rs1869937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1869938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4821169	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57806024	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs60298479	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73398737	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73400711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73400712	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73400714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73400715	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9609845	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1062127	chr22:33755479-34085278	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv544683	chr22:33755479-34085278	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv531588	chr22:33776857-34150188	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1055791	chr22:33822226-34159536	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1065417	chr22:33823850-34053325	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv933309	chr22:33825232-34053000	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv917167	chr22:33852676-34137036	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1062832	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv544686	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv914987	chr22:33920421-34047427	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv914988	chr22:33975998-34083987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv934161	chr22:33979015-34118621	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv588935	chr22:34008430-34073758	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv914989	chr22:34011334-34083987	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33965200-34045800	Weak transcription	Pancreas	Pancrea
2	chr22:33994200-34050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:33995800-34049800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr22:34003000-34062400	Weak transcription	Gastric	stomach
5	chr22:34007200-34050400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:34016200-34046000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr22:34017000-34050400	Weak transcription	Colonic Mucosa	Colon
8	chr22:34017800-34047800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr22:34018600-34045600	Weak transcription	Colon Smooth Muscle	Colon
10	chr22:34019400-34050600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr22:34021200-34045600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr22:34021400-34045600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr22:34021400-34053000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr22:34021600-34045400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr22:34028200-34048400	Weak transcription	HepG2	liver
16	chr22:34033400-34049800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr22:34035400-34046200	Weak transcription	Fetal Intestine Large	intestine
18	chr22:34035400-34046200	Weak transcription	Lung	lung
19	chr22:34035800-34045600	Weak transcription	Right Ventricle	heart
20	chr22:34036600-34048800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr22:34036800-34055000	Weak transcription	Brain Anterior Caudate	brain
22	chr22:34037200-34045600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr22:34037200-34046200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr22:34037200-34046200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr22:34037400-34049800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr22:34037600-34045800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr22:34040200-34056200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr22:34042200-34047400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr22:34042200-34048400	Weak transcription	Stomach Mucosa	stomach
30	chr22:34043000-34045600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr22:34043000-34054800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr22:34043200-34045600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr22:34043400-34050600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr22:34043600-34045400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr22:34043800-34046000	Strong transcription	Fetal Stomach	stomach
36	chr22:34043800-34048800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr22:34044200-34045600	Weak transcription	Fetal Muscle Leg	muscle
38	chr22:34044200-34046600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr22:34044200-34048400	Weak transcription	Fetal Intestine Small	intestine
40	chr22:34044400-34062200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr22:34044600-34046200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr22:34044600-34046800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr22:34044600-34047000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr22:34044800-34046200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr22:34044800-34046200	Strong transcription	Aorta	Aorta
46	chr22:34044800-34046200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr22:34044800-34046400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr22:34044800-34046400	Strong transcription	Fetal Lung	lung
49	chr22:34044800-34046600	Strong transcription	Ovary	ovary
50	chr22:34044800-34046800	Strong transcription	Stomach Smooth Muscle	stomach

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