Variant report

Variant	rs16994499
Chromosome Location	chr20:14327758-14327759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1114952	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1114953	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1555411	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs16994428	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs16994463	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs16994493	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs16994496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16994501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1998487	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2181530	0.81[ASN][1000 genomes]
rs2208457	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2327820	0.93[ASN][1000 genomes]
rs2876375	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[ASN][1000 genomes]
rs35253731	0.81[ASN][1000 genomes]
rs4813154	0.81[ASN][1000 genomes]
rs4814292	0.93[ASN][1000 genomes]
rs55763358	0.93[ASN][1000 genomes]
rs55985306	0.93[ASN][1000 genomes]
rs6033905	0.93[ASN][1000 genomes]
rs6033907	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[ASN][1000 genomes]
rs6033916	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs6033917	0.93[ASN][1000 genomes]
rs6033946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs6042596	0.81[ASN][1000 genomes]
rs6042601	0.93[ASN][1000 genomes]
rs6042606	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[ASN][1000 genomes]
rs6042614	0.93[ASN][1000 genomes]
rs6042616	0.93[ASN][1000 genomes]
rs6042623	1.00[CHB][hapmap]
rs6042677	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6042678	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[ASN][1000 genomes]
rs6042679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6074706	0.93[ASN][1000 genomes]
rs6074707	0.93[ASN][1000 genomes]
rs6079359	0.93[ASN][1000 genomes]
rs6079360	0.93[ASN][1000 genomes]
rs6079371	0.93[ASN][1000 genomes]
rs73901234	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8120919	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs912190	0.93[ASN][1000 genomes]
rs9967919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1057486	chr20:14077828-14469129	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1066235	chr20:14173771-14389050	Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1055499	chr20:14224873-14848061	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv432101	chr20:14294196-14353346	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14327200-14327800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links