Variant report

Variant	rs16995785
Chromosome Location	chr19:19039698-19039699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19028142..19040542-chr19:19046967..19057144,34	MCF-7	breast:
2	chr19:19038588..19040520-chr19:19096486..19099319,2	MCF-7	breast:
3	chr19:19039541..19041995-chr19:19096348..19099179,2	MCF-7	breast:
4	chr19:19038541..19041314-chr19:19041577..19044424,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000051128	Chromatin interaction
ENSG00000269019	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2106660	0.80[CEU][hapmap]
rs2158004	0.81[CEU][hapmap]
rs56245612	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911293	chr19:18872917-19050957	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv911294	chr19:18872917-19093619	Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv911297	chr19:18928480-19077385	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv911298	chr19:18928480-19093619	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv911300	chr19:18944025-19093619	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv470132	chr19:18964442-19054720	Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv911301	chr19:18994638-19077385	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
8	nsv911302	chr19:18995201-19088981	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv833778	chr19:19012669-19201487	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
10	nsv543926	chr19:19029529-19062771	Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19031600-19042600	Weak transcription	Fetal Heart	heart
2	chr19:19031600-19042600	Strong transcription	Fetal Intestine Small	intestine
3	chr19:19031600-19043200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:19031600-19043200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr19:19031600-19043200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:19031600-19044000	Weak transcription	HSMM	muscle
7	chr19:19031600-19045200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr19:19031800-19040600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:19031800-19042800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr19:19031800-19043400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:19031800-19043400	Strong transcription	Fetal Stomach	stomach
12	chr19:19032000-19039800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr19:19032000-19039800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr19:19032000-19040000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:19032000-19040400	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr19:19032000-19040600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr19:19032000-19040600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr19:19032000-19043000	Strong transcription	Fetal Intestine Large	intestine
19	chr19:19032000-19045600	Strong transcription	Osteobl	bone
20	chr19:19032000-19046000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr19:19032200-19040000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr19:19032200-19040000	Strong transcription	Brain Angular Gyrus	brain
23	chr19:19032200-19040000	Strong transcription	Brain Cingulate Gyrus	brain
24	chr19:19032200-19040000	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr19:19032200-19040000	Strong transcription	Fetal Thymus	thymus
26	chr19:19032200-19040000	Strong transcription	Ovary	ovary
27	chr19:19032200-19040000	Strong transcription	Thymus	Thymus
28	chr19:19032200-19040400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr19:19032200-19040400	Strong transcription	Brain Anterior Caudate	brain
30	chr19:19032200-19040400	Strong transcription	Brain Hippocampus Middle	brain
31	chr19:19032200-19040400	Strong transcription	Gastric	stomach
32	chr19:19032200-19040800	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr19:19032200-19042400	Strong transcription	Fetal Brain Female	brain
34	chr19:19032200-19042600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr19:19032200-19042800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr19:19032200-19043200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr19:19032200-19045200	Strong transcription	NHEK	skin
38	chr19:19032200-19045600	Strong transcription	Lung	lung
39	chr19:19032200-19046600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr19:19032200-19049400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr19:19032200-19049600	Strong transcription	Fetal Muscle Leg	muscle
42	chr19:19032400-19039800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr19:19032400-19039800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr19:19032400-19039800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr19:19032400-19040000	Strong transcription	Liver	Liver
46	chr19:19032400-19040000	Strong transcription	Duodenum Mucosa	Duodenum
47	chr19:19032400-19040200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr19:19032400-19040200	Strong transcription	Spleen	Spleen
49	chr19:19032400-19040400	Strong transcription	Adipose Nuclei	Adipose
50	chr19:19032400-19040600	Strong transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links