Variant report

Variant	rs16996054
Chromosome Location	chr20:15561104-15561105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10485530	1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs16995687	1.00[ASW][hapmap]
rs73900003	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv458933	chr20:15549323-15561894	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv585631	chr20:15549323-15561894	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15543000-15562200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr20:15559000-15563000	Weak transcription	Colon Smooth Muscle	Colon
3	chr20:15560200-15561200	Enhancers	Fetal Intestine Small	intestine
4	chr20:15560200-15561600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:15560400-15561600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr20:15560400-15561600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr20:15560600-15561600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr20:15560800-15561200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr20:15560800-15561200	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr20:15560800-15561200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:15560800-15561400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr20:15561000-15561800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:15561000-15562000	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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