Variant report

Variant	rs16996128
Chromosome Location	chr20:15593238-15593239
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1001105	0.81[EUR][1000 genomes]
rs10485531	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs460938	0.81[AFR][1000 genomes]
rs6043398	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15584800-15593600	Weak transcription	Fetal Intestine Small	intestine
2	chr20:15589000-15596000	Enhancers	Fetal Heart	heart
3	chr20:15591000-15595200	Enhancers	Liver	Liver
4	chr20:15591600-15594400	Weak transcription	Aorta	Aorta
5	chr20:15592200-15594800	Enhancers	Fetal Lung	lung
6	chr20:15592800-15594400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr20:15592800-15594400	Enhancers	Brain Germinal Matrix	brain
8	chr20:15593000-15594000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:15593200-15593600	Enhancers	Brain Cingulate Gyrus	brain
10	chr20:15593200-15593800	Enhancers	Fetal Brain Male	brain
11	chr20:15593200-15594000	Enhancers	Fetal Brain Female	brain
12	chr20:15593200-15594200	Enhancers	Brain Hippocampus Middle	brain
13	chr20:15593200-15595200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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